The structural basis of DNA binding by the single-stranded DNA-binding protein from Sulfolobus solfataricus

R. Gamsjaeger, R. Kariawasam, A.X. Gimenez, C. Touma, E. McIlwain, R.E. Bernardo, N.E. Shepherd, S.F. Ataide, Q. Dong, D.J. Richard, M.F. White, L. Cubeddu

Research output: Contribution to journalArticlepeer-review

28 Citations (Scopus)

Abstract

Canonical single-stranded DNA-binding proteins (SSBs) from the oligosaccharide/oligonucleotide-binding (OB) domain family are present in all known organisms and are critical for DNA replication, recombination and repair. The SSB from the hyperthermophilic crenarchaeote Sulfolobus solfataricus (SsoSSB) has a 'simple' domain organization consisting of a single DNA-binding OB fold coupled to a flexible C-terminal tail, in contrast with other SSBs in this family that incorporate up to four OB domains. Despite the large differences in the domain organization within the SSB family, the structure of the OB domain is remarkably similar all cellular life forms. However, there are significant differences in the molecular mechanism of ssDNA binding. We have determined the structure of the SsoSSB OB domain bound to ssDNA by NMR spectroscopy. We reveal that ssDNA recognition is modulated by base-stacking of three key aromatic residues, in contrast with the OB domains of human RPA and the recently discovered human homologue of SsoSSB, hSSB1. We also demonstrate that SsoSSB binds ssDNA with a footprint of five bases and with a defined binding polarity. These data elucidate the structural basis of DNA binding and shed light on the molecular mechanism by which these 'simple' SSBs interact with ssDNA.
Original languageEnglish
Pages (from-to)337-346
Number of pages10
JournalBiochemical Journal
Volume465
Issue number2
Early online date4 Nov 2014
DOIs
Publication statusPublished - 15 Jan 2015

Keywords

  • Base-stacking
  • NMR
  • OB domain
  • Single-stranded DNA-binding protein
  • Sulfolobus solfataricus

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