Projects per year
Abstract
Background: Genomic and transcriptomic approaches have the potential for unveiling the genome-wide response to environmental perturbations. The abundance of the catadromous European eel (Anguilla anguilla) stock has been declining since the 1980s probably due to a combination of anthropogenic and climatic factors. In this paper, we explore the transcriptomic dynamics between individuals from high (river Tiber, Italy) and low pollution (lake Bolsena, Italy) environments, which were measured for 36 PCBs, several organochlorine pesticides and brominated flame retardants and nine metals. Results: To this end, we first (i) updated the European eel transcriptome using deep sequencing data with a total of 640,040 reads assembled into 44,896 contigs (Eeelbase release 2.0), and (ii) developed a transcriptomic platform for global gene expression profiling in the critically endangered European eel of about 15,000 annotated contigs, which was applied to detect differentially expressed genes between polluted sites. Several detoxification genes related to metabolism of pollutants were upregulated in the highly polluted site, including genes that take part in phase I of the xenobiotic metabolism (CYP3A), phase II (glutathione-S-transferase) and oxidative stress (glutathione peroxidase). In addition, key genes in the mitochondrial respiratory chain and oxidative phosphorylation were down-regulated at the Tiber site relative to the Bolsena site. Conclusions: Together with the induced high expression of detoxification genes, the suggested lowered expression of genes supposedly involved in metabolism suggests that pollution may also be associated with decreased respiratory and energy production.
Original language | English |
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Article number | 507 |
Number of pages | 21 |
Journal | BMC Genomics |
Volume | 13 |
DOIs | |
Publication status | Published - Sept 2012 |
Keywords
- Anguilla anguilla
- European eel
- Transcriptome
- Microarrays
- Pollution
Fingerprint
Dive into the research topics of 'Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel'. Together they form a unique fingerprint.Projects
- 3 Finished
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SEQUENCING OF EST LIBRARIES: Sequencing of EST libraries from the European eel (Anguilla anguilla)
Cramb, G. (PI) & Hazon, N. (CoI)
1/08/08 → 31/07/09
Project: Standard
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Aquaporin water channels: Aquaporin water channels and osmoregulation in the European eel (Anguilla anguilla): the potential toxic effects of brominated flame retardants
Cramb, G. (PI) & Hazon, N. (CoI)
1/04/08 → 30/08/11
Project: Standard
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NERC NE/C513234/1: The functional analysis of gene networks of importance in environmental adaptation
Johnston, I. A. (PI), Cramb, G. (CoI), Hazon, N. (CoI) & Kinghorn, J. R. (CoI)
1/10/04 → 30/09/05
Project: Standard