Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions

J. Panovska-Griffiths*, B. Swallow, R. Hinch, J. Cohen, K. Rosenfeld, R. M. Stuart, L. Ferretti, F. Di Lauro, C. Wymant, A. Izzo, W. Waites, R. Viner, C. Bonell, C. Fraser, D. Klein, C. C. Kerr, The COVID-19 Genomics UK (COG-UK) Consortium

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

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Abstract

The English SARS-CoV-2 epidemic has been affected by the emergence of new viral variants such as B.1.177, Alpha and Delta, and changing restrictions. We used statistical models and the agent-based model Covasim, in June 2021, to estimate B.1.177 to be 20% more transmissible than the wild type, Alpha to be 50–80% more transmissible than B.1.177 and Delta to be 65–90% more transmissible than Alpha. Using these estimates in Covasim (calibrated 1 September 2020 to 20 June 2021), in June 2021, we found that due to the high transmissibility of Delta, resurgence in infections driven by the Delta variant would not be prevented, but would be strongly reduced by delaying the relaxation of restrictions by one month and with continued vaccination.
Original languageEnglish
Article number20210315
Number of pages19
JournalPhilosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
Volume380
Issue number2233
Early online date15 Aug 2022
DOIs
Publication statusPublished - 3 Oct 2022

Keywords

  • Multivariateregression modelling
  • COVID-19
  • Agent-based modelling

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