Polish topologies on endomorphism monoids of relational structures

In this paper we present general techniques for characterising minimal and maximal semigroup topologies on the endomorphism monoid End(A) of a countable relational structure A. As applications, we show that the endomorphism monoids of several well-known relational structures, including the random graph, the random directed graph, and the random partial order, possess a unique Polish semigroup topology. In every case this unique topology is the subspace topology induced by the usual topology on the Baire space N^N. We also show that many of these structures have the property that every homomorphism from their endomorphism monoid to a second countable topological semigroup is continuous; referred to as automatic continuity. Many of the results about endomorphism monoids are extended to clones of polymorphisms on the same structures.