Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees

Camila L. Chaves, Celine Blanc-Jolivet*, Alexandre M. Sebbenn, Malte Mader, Barbara R.V. Meyer-Sand, Kathelyn Paredes-Villanueva, Euridice N. Honorio Coronado, Carmen Garcia-Davila, Niklas Tysklind, Valerie Troispoux, Marie Massot, Bernd Degen

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

8 Citations (Scopus)

Abstract

We developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed.

Original languageEnglish
Pages (from-to)329-331
Number of pages3
JournalConservation Genetics Resources
Volume11
Issue number3
DOIs
Publication statusPublished - 15 Sept 2019

Keywords

  • DNA fingerprints
  • Geographical origin
  • MiSeq
  • RADSeq

Fingerprint

Dive into the research topics of 'Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees'. Together they form a unique fingerprint.

Cite this