MOSAL: software tools for multiobjective sequence alignment

Luís  Paquete; Pedro Matias; Maryam Abbasi; Miguel Monsanto Pinheiro

doi:10.1186/1751-0473-9-2

MOSAL: software tools for multiobjective sequence alignment

Luís Paquete, Pedro Matias, Maryam Abbasi, Miguel Monsanto Pinheiro

School of Medicine

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Abstract

Multiobjective sequence alignment brings the advantage of providing a set of alignments that represent the trade-off between performing insertion/deletions and matching symbols from both sequences. Each of these alignments provide a potential explanation of the relationship between the sequences. We introduce MOSAL, a software tool that provides an open-source implementation and an on-line application for multiobjective pairwise sequence alignment.

Original language	English
Article number	2
Journal	Source Code for Biology and Medicine
Volume	9
DOIs	https://doi.org/10.1186/1751-0473-9-2
Publication status	Published - 8 Jan 2014

Keywords

Pairwise sequence alignment
Multiobjective optimization
Dynamic programming

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10.1186/1751-0473-9-2

Paquete-etal-1751-0473-9-2
© 2014 Paquete et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
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abstract = "Multiobjective sequence alignment brings the advantage of providing a set of alignments that represent the trade-off between performing insertion/deletions and matching symbols from both sequences. Each of these alignments provide a potential explanation of the relationship between the sequences. We introduce MOSAL, a software tool that provides an open-source implementation and an on-line application for multiobjective pairwise sequence alignment. ",

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AU - Paquete, Luís

AU - Matias, Pedro

AU - Abbasi, Maryam

AU - Monsanto Pinheiro, Miguel

PY - 2014/1/8

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AB - Multiobjective sequence alignment brings the advantage of providing a set of alignments that represent the trade-off between performing insertion/deletions and matching symbols from both sequences. Each of these alignments provide a potential explanation of the relationship between the sequences. We introduce MOSAL, a software tool that provides an open-source implementation and an on-line application for multiobjective pairwise sequence alignment.

KW - Pairwise sequence alignment

KW - Multiobjective optimization

KW - Dynamic programming

UR - https://www.scopus.com/pages/publications/84892150149

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DO - 10.1186/1751-0473-9-2

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VL - 9

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JF - Source Code for Biology and Medicine

M1 - 2

ER -

MOSAL: software tools for multiobjective sequence alignment

Abstract

Keywords

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