Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species

Niklas Tysklind*, Céline Blanc-Jolivet, Malte Mader, Barbara R.V. Meyer-Sand, Kathelyn Paredes-Villanueva, Eurídice N. Honorio Coronado, Carmen R. García-Dávila, Alexandre M. Sebbenn, Henri Caron, Valerie Troispoux, Erwan Guichoux, Bernd Degen

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

4 Citations (Scopus)

Abstract

Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping.

Original languageEnglish
Pages (from-to)337-339
Number of pages3
JournalConservation Genetics Resources
Volume11
Issue number3
DOIs
Publication statusPublished - 15 Sept 2019

Keywords

  • Carapa guianensis
  • Carapa surinamensis
  • DNA-fingerprints
  • Geographical origin
  • MassARRAY
  • MiSeq
  • RADSeq
  • Tropical timber

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