Abstract
Crystal structures, Hirshfeld surface analysis and a computational study have been carried out on 2-oxo-2H-chromene-3-carboxylates. Crystal structures are reported for ethyl R-2-oxo-2H-chromene-3-carboxylate derivatives, 2a: R=6-Me, 2b: 7-Me, 2c: 7-Me, 2d: R=7-MeO. In contrast to 2-oxo-2H-chromene-3-carboxamides, 1,
in which classical intramolecular N–H···O hydrogen bonds stabilize
planar structures and hinder rotation of the amido group out of the
coumarin plane in 2, without an equivalent hydrogen
bond, there is a greater rotational freedom of the carboxylate group.
The interplanar angles between the coumarin core and its attached
–C(O)–R substituent in crystalline 2a, 2b, 2c and 2d
are 10.41(6), 36.65(6), 10.4(2) and 5.64(6)°, respectively, with
distances between the carbonyl oxygen atoms of 2.8255(16), 2.9278(16),
4.226(2) and 2.8328(14) Å, respectively. A theoretical study of
molecular conformations was carried out at the M06-2X density level with
the 6-31+G(d) and aug-cc-pVTZ basis sets, in methanol solution modeled
by PCM, indicated that the most stable conformations had the carbonyl
group of the ester in the plane of the coumarin core: the s-cis arrangement of the ester carbonyl and the 2-oxo moieties being the slightly more stable than the s-trans form by less than 0.5 kcal/mol. The experimental conformations of 2a and 2d match well the low energy s-cis arrangement, and 2c matches the slightly lesser stable s-trans arrangement found in the theoretical study. A survey of the molecular conformations of more than 50 2H-chromene-3-carboxylates derivatives in the CCDC data base indicated two distinct groupings of conformations, s-cis and s-trans, each with interplanar angles <30°.
Original language | English |
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Pages (from-to) | 85-99 |
Number of pages | 16 |
Journal | Zeitschrift fur Kristallographie |
Volume | 234 |
Issue number | 2 |
Early online date | 24 Jan 2019 |
DOIs | |
Publication status | Published - 25 Feb 2019 |
Keywords
- 2-oxo-2H-chromene-3-carboxylate derivatives
- Crystal structures
- Density functional theory
- Hirshfeld surface analysis
- Molecular conformation
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Dive into the research topics of 'Crystal structures, Hirshfeld surface analysis and a computational study of four ethyl 2-oxo-2H-chromene-3-carboxylate derivatives: a survey of organyl 2-oxo-2H-chromene-3-carboxylate structures'. Together they form a unique fingerprint.Datasets
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Crystal structures, Hirshfeld surface analysis and a computational study of four ethyl 2-oxo-2H-chromene-3-carboxylate derivatives (Crystallography data)
Gomes, L. R. (Creator), Low, J. N. (Creator), Van Mourik, T. (Creator), da Silveira Pinto, L. S. (Creator), de Souza, M. V. N. (Creator) & Wardell, J. L. (Creator), Cambridge Crystallographic Data Centre, 26 Nov 2018
https://dx.doi.org/10.5517/ccdc.csd.cc1psvjv and 3 more links, https://dx.doi.org/10.5517/ccdc.csd.cc1psvkw, https://dx.doi.org/10.5517/ccdc.csd.cc1psvlx, https://dx.doi.org/10.5517/ccdc.csd.cc1psvmy (show fewer)
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