BioTIME: a database of biodiversity time series for the Anthropocene

Maria Dornelas; Laura H. Antão; Faye Moyes; Amanda E. Bates; Anne E. Magurran; Dušan Adam; Asem A. Akhmetzhanova; Ward Appeltans; José Manuel Arcos; Haley Arnold; Narayanan Ayyappan; Gal Badihi; Andrew H. Baird; Miguel Barbosa; Tiago Egydio Barreto; Claus Bässler; Alecia Bellgrove; Jonathan Belmaker; Lisandro Benedetti-cecchi; Brian J. Bett; Anne D. Bjorkman; Magdalena Błażewicz; Shane A. Blowes; Christopher P. Bloch; Timothy C. Bonebrake; Susan Boyd; Matt Bradford; Andrew J. Brooks; James H. Brown; Helge Bruelheide; Phaedra Budy; Fernando Carvalho; Edward Castañeda-moya; Chaolun Allen Chen; John F. Chamblee; Tory J. Chase; Laura Siegwart Collier; Sharon K. Collinge; Richard Condit; Elisabeth J. Cooper; J. Hans C. Cornelissen; Unai Cotano; Shannan Kyle Crow; Gabriella Damasceno; Claire H. Davies; Robert A. Davis; Frank P. Day; Steven Degraer; Tim S. Doherty; Timothy E. Dunn; Giselda Durigan; J. Emmett Duffy; Dor Edelist; Graham J. Edgar; Robin Elahi; Sarah C. Elmendorf; Anders Enemar; S. K. Morgan Ernest; Rubén Escribano; Marc Estiarte; Brian S. Evans; Tung-yung Fan; Fabiano Turini Farah; Luiz Loureiro Fernandes; Fábio Z. Farneda; Alessandra Fidelis; Robert Fitt; Anna Maria Fosaa; Geraldo Antonio Daher Correa Franco; Grace E. Frank; William R. Fraser; Hernando García; Roberto Cazzolla Gatti; Or Givan; Elizabeth Gorgone-barbosa; William A. Gould; Corinna Gries; Gary D. Grossman; Julio R. Gutierréz; Stephen Hale; Mark E. Harmon; John Harte; Gary Haskins; Donald L. Henshaw; Luise Hermanutz; Pamela Hidalgo; Pedro Higuchi; Andrew Hoey; Gert Van Hoey; Annika Hofgaard; Kristen Holeck; Robert D. Hollister; Richard Holmes; Mia Hoogenboom; Chih-hao Hsieh; Stephen P. Hubbell; Falk Huettmann; Christine L. Huffard; Allen H. Hurlbert; Natália Macedo Ivanauskas; David Janík; Ute Jandt; Anna Jażdżewska; Tore Johannessen; Jill Johnstone; Julia Jones; Faith A. M. Jones; Jungwon Kang; Tasrif Kartawijaya; Erin C. Keeley; Douglas A. Kelt; Rebecca Kinnear; Kari Klanderud; Halvor Knutsen; Christopher C. Koenig; Alessandra R. Kortz; Kamil Král; Linda A. Kuhnz; Chao-yang Kuo; David J. Kushner; Claire Laguionie-marchais; Lesley T. Lancaster; Cheol Min Lee; Jonathan S. Lefcheck; Esther Lévesque; David Lightfoot; Francisco Lloret; John D. Lloyd; Adrià López-baucells; Maite Louzao; Joshua S. Madin; Borgþór Magnússon; Shahar Malamud; Iain Matthews; Kent P. Mcfarland; Brian Mcgill; Diane Mcknight; William O. Mclarney; Jason Meador; Peter L. Meserve; Daniel J. Metcalfe; Christoph F. J. Meyer; Anders Michelsen; Nataliya Milchakova; Tom Moens; Even Moland; Jon Moore; Carolina Mathias Moreira; Jörg Müller; Grace Murphy; Isla H. Myers-smith; Randall W. Myster; Andrew Naumov; Francis Neat; James A. Nelson; Michael Paul Nelson; Stephen F. Newton; Natalia Norden; Jeffrey C. Oliver; Esben M. Olsen; Vladimir G. Onipchenko; Krzysztof Pabis; Robert J. Pabst; Alain Paquette; Sinta Pardede; David M. Paterson; Raphaël Pélissier; Josep Peñuelas; Alejandro Pérez-matus; Oscar Pizarro; Francesco Pomati; Eric Post; Herbert H. T. Prins; John C. Priscu; Pieter Provoost; Kathleen L. Prudic; Erkki Pulliainen; B. R. Ramesh; Olivia Mendivil Ramos; Andrew Rassweiler; Jose Eduardo Rebelo; Daniel C. Reed; Peter B. Reich; Suzanne M. Remillard; Anthony J. Richardson; J. Paul Richardson; Itai Van Rijn; Ricardo Rocha; Victor H. Rivera-monroy; Christian Rixen; Kevin P. Robinson; Ricardo Ribeiro Rodrigues; Denise De Cerqueira Rossa-feres; Lars Rudstam; Henry Ruhl; Catalina S. Ruz; Erica M. Sampaio; Nancy Rybicki; Andrew Rypel; Sofia Sal; Beatriz Salgado; Flavio A. M. Santos; Ana Paula Savassi-coutinho; Sara Scanga; Jochen Schmidt; Robert Schooley; Fakhrizal Setiawan; Kwang-tsao Shao; Gaius R. Shaver; Sally Sherman; Thomas W. Sherry; Jacek Siciński; Caya Sievers; Ana Carolina Da Silva; Fernando Rodrigues Da Silva; Fabio L. Silveira; Jasper Slingsby; Tracey Smart; Sara J. Snell; Nadejda A. Soudzilovskaia; Gabriel B. G. Souza; Flaviana Maluf Souza; Vinícius Castro Souza; Christopher D. Stallings; Rowan Stanforth; Emily H. Stanley; José Mauro Sterza; Maarten Stevens; Rick Stuart-smith; Yzel Rondon Suarez; Sarah Supp; Jorge Yoshio Tamashiro; Sukmaraharja Tarigan; Gary P. Thiede; Simon Thorn; Anne Tolvanen; Maria Teresa Zugliani Toniato; Ørjan Totland; Robert R. Twilley; Gediminas Vaitkus; Nelson Valdivia; Martha Isabel Vallejo; Thomas J. Valone; Carl Van Colen; Jan Vanaverbeke; Fabio Venturoli; Hans M. Verheye; Marcelo Vianna; Rui P. Vieira; Tomáš Vrška; Con Quang Vu; Lien Van Vu; Robert B. Waide; Conor Waldock; Dave Watts; Sara Webb; Tomasz Wesołowski; Ethan P. White; Claire E. Widdicombe; Dustin Wilgers; Richard Williams; Stefan B. Williams; Mark Williamson; Michael R. Willig; Trevor J. Willis; Sonja Wipf; Kerry D. Woods; Eric J. Woehler; Kyle Zawada; Michael L. Zettler

doi:10.1111/geb.12729

BioTIME: a database of biodiversity time series for the Anthropocene

Maria Dornelas, Laura H. Antão, Faye Moyes, Amanda E. Bates, Anne E. Magurran, Dušan Adam, Asem A. Akhmetzhanova, Ward Appeltans, José Manuel Arcos, Haley Arnold, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Miguel Barbosa, Tiago Egydio Barreto, Claus Bässler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-cecchi, Brian J. BettAnne D. Bjorkman, Magdalena Błażewicz, Shane A. Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra Budy, Fernando Carvalho, Edward Castañeda-moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham J. Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Rubén Escribano, Marc Estiarte, Brian S. Evans, Tung-yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fábio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando García, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-barbosa, William A. Gould, Corinna Gries, Gary D. Grossman, Julio R. Gutierréz, Stephen Hale, Mark E. Harmon, John Harte, Gary Haskins, Donald L. Henshaw, Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Stephen P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natália Macedo Ivanauskas, David Janík, Ute Jandt, Anna Jażdżewska, Tore Johannessen, Jill Johnstone, Julia Jones, Faith A. M. Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Král, Linda A. Kuhnz, Chao-yang Kuo, David J. Kushner, Claire Laguionie-marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Lévesque, David Lightfoot, Francisco Lloret, John D. Lloyd, Adrià López-baucells, Maite Louzao, Joshua S. Madin, Borgþór Magnússon, Shahar Malamud, Iain Matthews, Kent P. Mcfarland, Brian Mcgill, Diane Mcknight, William O. Mclarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon Moore, Carolina Mathias Moreira, Jörg Müller, Grace Murphy, Isla H. Myers-smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David M. Paterson, Raphaël Pélissier, Josep Peñuelas, Alejandro Pérez-matus, Oscar Pizarro, Francesco Pomati, Eric Post, Herbert H. T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Olivia Mendivil Ramos, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai Van Rijn, Ricardo Rocha, Victor H. Rivera-monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise De Cerqueira Rossa-feres, Lars Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy Rybicki, Andrew Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-coutinho, Sara Scanga, Jochen Schmidt, Robert Schooley, Fakhrizal Setiawan, Kwang-tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Siciński, Caya Sievers, Ana Carolina Da Silva, Fernando Rodrigues Da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinícius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, José Mauro Sterza, Maarten Stevens, Rick Stuart-smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Teresa Zugliani Toniato, Ørjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomáš Vrška, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesołowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Kyle Zawada, Michael L. Zettler

Research output: Contribution to journal › Article › peer-review

Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.

Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of two, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and
contextual information about each record.

Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1 000 000 000 000 cm2).

Time period and grain: BioTIME records span from 1874 to 2016. The minimum temporal grain across all datasets in BioTIME is year.

Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton, and terrestrial invertebrates to small and large vertebrates.

Software format: .csv and .SQL

Original language	English
Pages (from-to)	760-786
Number of pages	27
Journal	Global Ecology and Biogeography
Volume	27
Issue number	7
DOIs	https://doi.org/10.1111/geb.12729
Publication status	Published - 24 Jul 2018

Keywords

Biodiversity
Global
Spatial
Species richness
Temporal
Turnover

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1111/geb.12729Licence: CC BY

Dornelas_2018_GEB__BioTIMEdatabase_CC
© 2018 The Authors. Global Ecology and Biogeography. Published by John Wiley & Sons Ltd This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
Final published version, 2.31 MBLicence: CC BY

Institutional Strategic Support Fund 2: ISSF 2
Naismith, J. (PI)
The Wellcome Trust
1/11/14 → 31/10/16
Project: Standard
BioTIME: ERC Advanced Grant - BioTime
Magurran, A. (PI)
European Research Council
1/08/10 → 31/07/15
Project: Standard

Widespread and diverging patterns of change in local phylogenetic diversity
Fernandez-Fournier, P. (Creator), Carroll, T. (Creator), Dornelas, M. (Creator) & Mooers, A. (Creator), Dryad, 26 Nov 2024
DOI: 10.5061/dryad.gqnk98sw0
Dataset
BioTIME
BioTIME Consortium (Creator), Azeredo de Dornelas, M. A. (Creator), Henriques Antao, L. I. (Creator), Moyes, F. H. (Creator), Bates, A. E. (Creator) & Magurran, A. E. (Creator), Zenodo, 2 Apr 2018
DOI: 10.5281/zenodo.1095627
Dataset

Cite this

Dornelas, M., Antão, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., Akhmetzhanova, A. A., Appeltans, W., Arcos, J. M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A. H., Barbosa, M., Barreto, T. E., Bässler, C., Bellgrove, A., Belmaker, J., Benedetti-cecchi, L., ... Zettler, M. L. (2018). BioTIME: a database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography, 27(7), 760-786. https://doi.org/10.1111/geb.12729

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title = "BioTIME: a database of biodiversity time series for the Anthropocene",

abstract = "Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of two, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology andcontextual information about each record.Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1 000 000 000 000 cm2).Time period and grain: BioTIME records span from 1874 to 2016. The minimum temporal grain across all datasets in BioTIME is year.Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton, and terrestrial invertebrates to small and large vertebrates.Software format: .csv and .SQL",

keywords = "Biodiversity, Global, Spatial, Species richness, Temporal, Turnover",

author = "Maria Dornelas and Ant{\~a}o, {Laura H.} and Faye Moyes and Bates, {Amanda E.} and Magurran, {Anne E.} and Du{\v s}an Adam and Akhmetzhanova, {Asem A.} and Ward Appeltans and Arcos, {Jos{\'e} Manuel} and Haley Arnold and Narayanan Ayyappan and Gal Badihi and Baird, {Andrew H.} and Miguel Barbosa and Barreto, {Tiago Egydio} and Claus B{\"a}ssler and Alecia Bellgrove and Jonathan Belmaker and Lisandro Benedetti-cecchi and Bett, {Brian J.} and Bjorkman, {Anne D.} and Magdalena B{\l}a{\.z}ewicz and Blowes, {Shane A.} and Bloch, {Christopher P.} and Bonebrake, {Timothy C.} and Susan Boyd and Matt Bradford and Brooks, {Andrew J.} and Brown, {James H.} and Helge Bruelheide and Phaedra Budy and Fernando Carvalho and Edward Casta{\~n}eda-moya and Chen, {Chaolun Allen} and Chamblee, {John F.} and Chase, {Tory J.} and {Siegwart Collier}, Laura and Collinge, {Sharon K.} and Richard Condit and Cooper, {Elisabeth J.} and Cornelissen, {J. Hans C.} and Unai Cotano and {Kyle Crow}, Shannan and Gabriella Damasceno and Davies, {Claire H.} and Davis, {Robert A.} and Day, {Frank P.} and Steven Degraer and Doherty, {Tim S.} and Dunn, {Timothy E.} and Giselda Durigan and Duffy, {J. Emmett} and Dor Edelist and Edgar, {Graham J.} and Robin Elahi and Elmendorf, {Sarah C.} and Anders Enemar and Ernest, {S. K. Morgan} and Rub{\'e}n Escribano and Marc Estiarte and Evans, {Brian S.} and Tung-yung Fan and {Turini Farah}, Fabiano and {Loureiro Fernandes}, Luiz and Farneda, {F{\'a}bio Z.} and Alessandra Fidelis and Robert Fitt and Fosaa, {Anna Maria} and {Daher Correa Franco}, {Geraldo Antonio} and Frank, {Grace E.} and Fraser, {William R.} and Hernando Garc{\'i}a and {Cazzolla Gatti}, Roberto and Or Givan and Elizabeth Gorgone-barbosa and Gould, {William A.} and Corinna Gries and Grossman, {Gary D.} and Gutierr{\'e}z, {Julio R.} and Stephen Hale and Harmon, {Mark E.} and John Harte and Gary Haskins and Henshaw, {Donald L.} and Luise Hermanutz and Pamela Hidalgo and Pedro Higuchi and Andrew Hoey and {Van Hoey}, Gert and Annika Hofgaard and Kristen Holeck and Hollister, {Robert D.} and Richard Holmes and Mia Hoogenboom and Chih-hao Hsieh and Hubbell, {Stephen P.} and Falk Huettmann and Huffard, {Christine L.} and Hurlbert, {Allen H.} and {Macedo Ivanauskas}, Nat{\'a}lia and David Jan{\'i}k and Ute Jandt and Anna Ja{\.z}d{\.z}ewska and Tore Johannessen and Jill Johnstone and Julia Jones and Jones, {Faith A. M.} and Jungwon Kang and Tasrif Kartawijaya and Keeley, {Erin C.} and Kelt, {Douglas A.} and Rebecca Kinnear and Kari Klanderud and Halvor Knutsen and Koenig, {Christopher C.} and Kortz, {Alessandra R.} and Kamil Kr{\'a}l and Kuhnz, {Linda A.} and Chao-yang Kuo and Kushner, {David J.} and Claire Laguionie-marchais and Lancaster, {Lesley T.} and {Min Lee}, Cheol and Lefcheck, {Jonathan S.} and Esther L{\'e}vesque and David Lightfoot and Francisco Lloret and Lloyd, {John D.} and Adri{\`a} L{\'o}pez-baucells and Maite Louzao and Madin, {Joshua S.} and Borg{\th}{\'o}r Magn{\'u}sson and Shahar Malamud and Iain Matthews and Mcfarland, {Kent P.} and Brian Mcgill and Diane Mcknight and Mclarney, {William O.} and Jason Meador and Meserve, {Peter L.} and Metcalfe, {Daniel J.} and Meyer, {Christoph F. J.} and Anders Michelsen and Nataliya Milchakova and Tom Moens and Even Moland and Jon Moore and {Mathias Moreira}, Carolina and J{\"o}rg M{\"u}ller and Grace Murphy and Myers-smith, {Isla H.} and Myster, {Randall W.} and Andrew Naumov and Francis Neat and Nelson, {James A.} and {Paul Nelson}, Michael and Newton, {Stephen F.} and Natalia Norden and Oliver, {Jeffrey C.} and Olsen, {Esben M.} and Onipchenko, {Vladimir G.} and Krzysztof Pabis and Pabst, {Robert J.} and Alain Paquette and Sinta Pardede and Paterson, {David M.} and Rapha{\"e}l P{\'e}lissier and Josep Pe{\~n}uelas and Alejandro P{\'e}rez-matus and Oscar Pizarro and Francesco Pomati and Eric Post and Prins, {Herbert H. T.} and Priscu, {John C.} and Pieter Provoost and Prudic, {Kathleen L.} and Erkki Pulliainen and Ramesh, {B. R.} and {Mendivil Ramos}, Olivia and Andrew Rassweiler and Rebelo, {Jose Eduardo} and Reed, {Daniel C.} and Reich, {Peter B.} and Remillard, {Suzanne M.} and Richardson, {Anthony J.} and Richardson, {J. Paul} and {Van Rijn}, Itai and Ricardo Rocha and Rivera-monroy, {Victor H.} and Christian Rixen and Robinson, {Kevin P.} and {Ribeiro Rodrigues}, Ricardo and {De Cerqueira Rossa-feres}, Denise and Lars Rudstam and Henry Ruhl and Ruz, {Catalina S.} and Sampaio, {Erica M.} and Nancy Rybicki and Andrew Rypel and Sofia Sal and Beatriz Salgado and Santos, {Flavio A. M.} and Savassi-coutinho, {Ana Paula} and Sara Scanga and Jochen Schmidt and Robert Schooley and Fakhrizal Setiawan and Kwang-tsao Shao and Shaver, {Gaius R.} and Sally Sherman and Sherry, {Thomas W.} and Jacek Sici{\'n}ski and Caya Sievers and {Da Silva}, {Ana Carolina} and {Rodrigues Da Silva}, Fernando and Silveira, {Fabio L.} and Jasper Slingsby and Tracey Smart and Snell, {Sara J.} and Soudzilovskaia, {Nadejda A.} and Souza, {Gabriel B. G.} and {Maluf Souza}, Flaviana and {Castro Souza}, Vin{\'i}cius and Stallings, {Christopher D.} and Rowan Stanforth and Stanley, {Emily H.} and {Mauro Sterza}, Jos{\'e} and Maarten Stevens and Rick Stuart-smith and {Rondon Suarez}, Yzel and Sarah Supp and {Yoshio Tamashiro}, Jorge and Sukmaraharja Tarigan and Thiede, {Gary P.} and Simon Thorn and Anne Tolvanen and {Teresa Zugliani Toniato}, Maria and {\O}rjan Totland and Twilley, {Robert R.} and Gediminas Vaitkus and Nelson Valdivia and Vallejo, {Martha Isabel} and Valone, {Thomas J.} and {Van Colen}, Carl and Jan Vanaverbeke and Fabio Venturoli and Verheye, {Hans M.} and Marcelo Vianna and Vieira, {Rui P.} and Tom{\'a}{\v s} Vr{\v s}ka and {Quang Vu}, Con and {Van Vu}, Lien and Waide, {Robert B.} and Conor Waldock and Dave Watts and Sara Webb and Tomasz Weso{\l}owski and White, {Ethan P.} and Widdicombe, {Claire E.} and Dustin Wilgers and Richard Williams and Williams, {Stefan B.} and Mark Williamson and Willig, {Michael R.} and Willis, {Trevor J.} and Sonja Wipf and Woods, {Kerry D.} and Woehler, {Eric J.} and Kyle Zawada and Zettler, {Michael L.}",

note = "The BioTIME database is accessible through the BioTIME website [http://biotime.st-andrews.ac.uk] and through the Zenodo repository [https://zenodo.org/record/1095627].",

year = "2018",

month = jul,

day = "24",

doi = "10.1111/geb.12729",

language = "English",

volume = "27",

pages = "760--786",

journal = "Global Ecology and Biogeography",

issn = "1466-822X",

publisher = "Wiley-Blackwell",

number = "7",

}

Dornelas, M, Antão, LH, Moyes, F, Bates, AE, Magurran, AE, Adam, D, Akhmetzhanova, AA, Appeltans, W, Arcos, JM, Arnold, H, Ayyappan, N, Badihi, G, Baird, AH, Barbosa, M, Barreto, TE, Bässler, C, Bellgrove, A, Belmaker, J, Benedetti-cecchi, L, Bett, BJ, Bjorkman, AD, Błażewicz, M, Blowes, SA, Bloch, CP, Bonebrake, TC, Boyd, S, Bradford, M, Brooks, AJ, Brown, JH, Bruelheide, H, Budy, P, Carvalho, F, Castañeda-moya, E, Chen, CA, Chamblee, JF, Chase, TJ, Siegwart Collier, L, Collinge, SK, Condit, R, Cooper, EJ, Cornelissen, JHC, Cotano, U, Kyle Crow, S, Damasceno, G, Davies, CH, Davis, RA, Day, FP, Degraer, S, Doherty, TS, Dunn, TE, Durigan, G, Duffy, JE, Edelist, D, Edgar, GJ, Elahi, R, Elmendorf, SC, Enemar, A, Ernest, SKM, Escribano, R, Estiarte, M, Evans, BS, Fan, T, Turini Farah, F, Loureiro Fernandes, L, Farneda, FZ, Fidelis, A, Fitt, R, Fosaa, AM, Daher Correa Franco, GA, Frank, GE, Fraser, WR, García, H, Cazzolla Gatti, R, Givan, O, Gorgone-barbosa, E, Gould, WA, Gries, C, Grossman, GD, Gutierréz, JR, Hale, S, Harmon, ME, Harte, J, Haskins, G, Henshaw, DL, Hermanutz, L, Hidalgo, P, Higuchi, P, Hoey, A, Van Hoey, G, Hofgaard, A, Holeck, K, Hollister, RD, Holmes, R, Hoogenboom, M, Hsieh, C, Hubbell, SP, Huettmann, F, Huffard, CL, Hurlbert, AH, Macedo Ivanauskas, N, Janík, D, Jandt, U, Jażdżewska, A, Johannessen, T, Johnstone, J, Jones, J, Jones, FAM, Kang, J, Kartawijaya, T, Keeley, EC, Kelt, DA, Kinnear, R, Klanderud, K, Knutsen, H, Koenig, CC, Kortz, AR, Král, K, Kuhnz, LA, Kuo, C, Kushner, DJ, Laguionie-marchais, C, Lancaster, LT, Min Lee, C, Lefcheck, JS, Lévesque, E, Lightfoot, D, Lloret, F, Lloyd, JD, López-baucells, A, Louzao, M, Madin, JS, Magnússon, B, Malamud, S, Matthews, I, Mcfarland, KP, Mcgill, B, Mcknight, D, Mclarney, WO, Meador, J, Meserve, PL, Metcalfe, DJ, Meyer, CFJ, Michelsen, A, Milchakova, N, Moens, T, Moland, E, Moore, J, Mathias Moreira, C, Müller, J, Murphy, G, Myers-smith, IH, Myster, RW, Naumov, A, Neat, F, Nelson, JA, Paul Nelson, M, Newton, SF, Norden, N, Oliver, JC, Olsen, EM, Onipchenko, VG, Pabis, K, Pabst, RJ, Paquette, A, Pardede, S, Paterson, DM, Pélissier, R, Peñuelas, J, Pérez-matus, A, Pizarro, O, Pomati, F, Post, E, Prins, HHT, Priscu, JC, Provoost, P, Prudic, KL, Pulliainen, E, Ramesh, BR, Mendivil Ramos, O, Rassweiler, A, Rebelo, JE, Reed, DC, Reich, PB, Remillard, SM, Richardson, AJ, Richardson, JP, Van Rijn, I, Rocha, R, Rivera-monroy, VH, Rixen, C, Robinson, KP, Ribeiro Rodrigues, R, De Cerqueira Rossa-feres, D, Rudstam, L, Ruhl, H, Ruz, CS, Sampaio, EM, Rybicki, N, Rypel, A, Sal, S, Salgado, B, Santos, FAM, Savassi-coutinho, AP, Scanga, S, Schmidt, J, Schooley, R, Setiawan, F, Shao, K, Shaver, GR, Sherman, S, Sherry, TW, Siciński, J, Sievers, C, Da Silva, AC, Rodrigues Da Silva, F, Silveira, FL, Slingsby, J, Smart, T, Snell, SJ, Soudzilovskaia, NA, Souza, GBG, Maluf Souza, F, Castro Souza, V, Stallings, CD, Stanforth, R, Stanley, EH, Mauro Sterza, J, Stevens, M, Stuart-smith, R, Rondon Suarez, Y, Supp, S, Yoshio Tamashiro, J, Tarigan, S, Thiede, GP, Thorn, S, Tolvanen, A, Teresa Zugliani Toniato, M, Totland, Ø, Twilley, RR, Vaitkus, G, Valdivia, N, Vallejo, MI, Valone, TJ, Van Colen, C, Vanaverbeke, J, Venturoli, F, Verheye, HM, Vianna, M, Vieira, RP, Vrška, T, Quang Vu, C, Van Vu, L, Waide, RB, Waldock, C, Watts, D, Webb, S, Wesołowski, T, White, EP, Widdicombe, CE, Wilgers, D, Williams, R, Williams, SB, Williamson, M, Willig, MR, Willis, TJ, Wipf, S, Woods, KD, Woehler, EJ, Zawada, K & Zettler, ML 2018, 'BioTIME: a database of biodiversity time series for the Anthropocene', Global Ecology and Biogeography, vol. 27, no. 7, pp. 760-786. https://doi.org/10.1111/geb.12729

TY - JOUR

T1 - BioTIME

T2 - a database of biodiversity time series for the Anthropocene

AU - Dornelas, Maria

AU - Antão, Laura H.

AU - Moyes, Faye

AU - Bates, Amanda E.

AU - Magurran, Anne E.

AU - Adam, Dušan

AU - Akhmetzhanova, Asem A.

AU - Appeltans, Ward

AU - Arcos, José Manuel

AU - Arnold, Haley

AU - Ayyappan, Narayanan

AU - Badihi, Gal

AU - Baird, Andrew H.

AU - Barbosa, Miguel

AU - Barreto, Tiago Egydio

AU - Bässler, Claus

AU - Bellgrove, Alecia

AU - Belmaker, Jonathan

AU - Benedetti-cecchi, Lisandro

AU - Bett, Brian J.

AU - Bjorkman, Anne D.

AU - Błażewicz, Magdalena

AU - Blowes, Shane A.

AU - Bloch, Christopher P.

AU - Bonebrake, Timothy C.

AU - Boyd, Susan

AU - Bradford, Matt

AU - Brooks, Andrew J.

AU - Brown, James H.

AU - Bruelheide, Helge

AU - Budy, Phaedra

AU - Carvalho, Fernando

AU - Castañeda-moya, Edward

AU - Chen, Chaolun Allen

AU - Chamblee, John F.

AU - Chase, Tory J.

AU - Siegwart Collier, Laura

AU - Collinge, Sharon K.

AU - Condit, Richard

AU - Cooper, Elisabeth J.

AU - Cornelissen, J. Hans C.

AU - Cotano, Unai

AU - Kyle Crow, Shannan

AU - Damasceno, Gabriella

AU - Davies, Claire H.

AU - Davis, Robert A.

AU - Day, Frank P.

AU - Degraer, Steven

AU - Doherty, Tim S.

AU - Dunn, Timothy E.

AU - Durigan, Giselda

AU - Duffy, J. Emmett

AU - Edelist, Dor

AU - Edgar, Graham J.

AU - Elahi, Robin

AU - Elmendorf, Sarah C.

AU - Enemar, Anders

AU - Ernest, S. K. Morgan

AU - Escribano, Rubén

AU - Estiarte, Marc

AU - Evans, Brian S.

AU - Fan, Tung-yung

AU - Turini Farah, Fabiano

AU - Loureiro Fernandes, Luiz

AU - Farneda, Fábio Z.

AU - Fidelis, Alessandra

AU - Fitt, Robert

AU - Fosaa, Anna Maria

AU - Daher Correa Franco, Geraldo Antonio

AU - Frank, Grace E.

AU - Fraser, William R.

AU - García, Hernando

AU - Cazzolla Gatti, Roberto

AU - Givan, Or

AU - Gorgone-barbosa, Elizabeth

AU - Gould, William A.

AU - Gries, Corinna

AU - Grossman, Gary D.

AU - Gutierréz, Julio R.

AU - Hale, Stephen

AU - Harmon, Mark E.

AU - Harte, John

AU - Haskins, Gary

AU - Henshaw, Donald L.

AU - Hermanutz, Luise

AU - Hidalgo, Pamela

AU - Higuchi, Pedro

AU - Hoey, Andrew

AU - Van Hoey, Gert

AU - Hofgaard, Annika

AU - Holeck, Kristen

AU - Hollister, Robert D.

AU - Holmes, Richard

AU - Hoogenboom, Mia

AU - Hsieh, Chih-hao

AU - Hubbell, Stephen P.

AU - Huettmann, Falk

AU - Huffard, Christine L.

AU - Hurlbert, Allen H.

AU - Macedo Ivanauskas, Natália

AU - Janík, David

AU - Jandt, Ute

AU - Jażdżewska, Anna

AU - Johannessen, Tore

AU - Johnstone, Jill

AU - Jones, Julia

AU - Jones, Faith A. M.

AU - Kang, Jungwon

AU - Kartawijaya, Tasrif

AU - Keeley, Erin C.

AU - Kelt, Douglas A.

AU - Kinnear, Rebecca

AU - Klanderud, Kari

AU - Knutsen, Halvor

AU - Koenig, Christopher C.

AU - Kortz, Alessandra R.

AU - Král, Kamil

AU - Kuhnz, Linda A.

AU - Kuo, Chao-yang

AU - Kushner, David J.

AU - Laguionie-marchais, Claire

AU - Lancaster, Lesley T.

AU - Min Lee, Cheol

AU - Lefcheck, Jonathan S.

AU - Lévesque, Esther

AU - Lightfoot, David

AU - Lloret, Francisco

AU - Lloyd, John D.

AU - López-baucells, Adrià

AU - Louzao, Maite

AU - Madin, Joshua S.

AU - Magnússon, Borgþór

AU - Malamud, Shahar

AU - Matthews, Iain

AU - Mcfarland, Kent P.

AU - Mcgill, Brian

AU - Mcknight, Diane

AU - Mclarney, William O.

AU - Meador, Jason

AU - Meserve, Peter L.

AU - Metcalfe, Daniel J.

AU - Meyer, Christoph F. J.

AU - Michelsen, Anders

AU - Milchakova, Nataliya

AU - Moens, Tom

AU - Moland, Even

AU - Moore, Jon

AU - Mathias Moreira, Carolina

AU - Müller, Jörg

AU - Murphy, Grace

AU - Myers-smith, Isla H.

AU - Myster, Randall W.

AU - Naumov, Andrew

AU - Neat, Francis

AU - Nelson, James A.

AU - Paul Nelson, Michael

AU - Newton, Stephen F.

AU - Norden, Natalia

AU - Oliver, Jeffrey C.

AU - Olsen, Esben M.

AU - Onipchenko, Vladimir G.

AU - Pabis, Krzysztof

AU - Pabst, Robert J.

AU - Paquette, Alain

AU - Pardede, Sinta

AU - Paterson, David M.

AU - Pélissier, Raphaël

AU - Peñuelas, Josep

AU - Pérez-matus, Alejandro

AU - Pizarro, Oscar

AU - Pomati, Francesco

AU - Post, Eric

AU - Prins, Herbert H. T.

AU - Priscu, John C.

AU - Provoost, Pieter

AU - Prudic, Kathleen L.

AU - Pulliainen, Erkki

AU - Ramesh, B. R.

AU - Mendivil Ramos, Olivia

AU - Rassweiler, Andrew

AU - Rebelo, Jose Eduardo

AU - Reed, Daniel C.

AU - Reich, Peter B.

AU - Remillard, Suzanne M.

AU - Richardson, Anthony J.

AU - Richardson, J. Paul

AU - Van Rijn, Itai

AU - Rocha, Ricardo

AU - Rivera-monroy, Victor H.

AU - Rixen, Christian

AU - Robinson, Kevin P.

AU - Ribeiro Rodrigues, Ricardo

AU - De Cerqueira Rossa-feres, Denise

AU - Rudstam, Lars

AU - Ruhl, Henry

AU - Ruz, Catalina S.

AU - Sampaio, Erica M.

AU - Rybicki, Nancy

AU - Rypel, Andrew

AU - Sal, Sofia

AU - Salgado, Beatriz

AU - Santos, Flavio A. M.

AU - Savassi-coutinho, Ana Paula

AU - Scanga, Sara

AU - Schmidt, Jochen

AU - Schooley, Robert

AU - Setiawan, Fakhrizal

AU - Shao, Kwang-tsao

AU - Shaver, Gaius R.

AU - Sherman, Sally

AU - Sherry, Thomas W.

AU - Siciński, Jacek

AU - Sievers, Caya

AU - Da Silva, Ana Carolina

AU - Rodrigues Da Silva, Fernando

AU - Silveira, Fabio L.

AU - Slingsby, Jasper

AU - Smart, Tracey

AU - Snell, Sara J.

AU - Soudzilovskaia, Nadejda A.

AU - Souza, Gabriel B. G.

AU - Maluf Souza, Flaviana

AU - Castro Souza, Vinícius

AU - Stallings, Christopher D.

AU - Stanforth, Rowan

AU - Stanley, Emily H.

AU - Mauro Sterza, José

AU - Stevens, Maarten

AU - Stuart-smith, Rick

AU - Rondon Suarez, Yzel

AU - Supp, Sarah

AU - Yoshio Tamashiro, Jorge

AU - Tarigan, Sukmaraharja

AU - Thiede, Gary P.

AU - Thorn, Simon

AU - Tolvanen, Anne

AU - Teresa Zugliani Toniato, Maria

AU - Totland, Ørjan

AU - Twilley, Robert R.

AU - Vaitkus, Gediminas

AU - Valdivia, Nelson

AU - Vallejo, Martha Isabel

AU - Valone, Thomas J.

AU - Van Colen, Carl

AU - Vanaverbeke, Jan

AU - Venturoli, Fabio

AU - Verheye, Hans M.

AU - Vianna, Marcelo

AU - Vieira, Rui P.

AU - Vrška, Tomáš

AU - Quang Vu, Con

AU - Van Vu, Lien

AU - Waide, Robert B.

AU - Waldock, Conor

AU - Watts, Dave

AU - Webb, Sara

AU - Wesołowski, Tomasz

AU - White, Ethan P.

AU - Widdicombe, Claire E.

AU - Wilgers, Dustin

AU - Williams, Richard

AU - Williams, Stefan B.

AU - Williamson, Mark

AU - Willig, Michael R.

AU - Willis, Trevor J.

AU - Wipf, Sonja

AU - Woods, Kerry D.

AU - Woehler, Eric J.

AU - Zawada, Kyle

AU - Zettler, Michael L.

N1 - The BioTIME database is accessible through the BioTIME website [http://biotime.st-andrews.ac.uk] and through the Zenodo repository [https://zenodo.org/record/1095627].

PY - 2018/7/24

Y1 - 2018/7/24

N2 - Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of two, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology andcontextual information about each record.Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1 000 000 000 000 cm2).Time period and grain: BioTIME records span from 1874 to 2016. The minimum temporal grain across all datasets in BioTIME is year.Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton, and terrestrial invertebrates to small and large vertebrates.Software format: .csv and .SQL

AB - Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of two, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology andcontextual information about each record.Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1 000 000 000 000 cm2).Time period and grain: BioTIME records span from 1874 to 2016. The minimum temporal grain across all datasets in BioTIME is year.Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton, and terrestrial invertebrates to small and large vertebrates.Software format: .csv and .SQL

KW - Biodiversity

KW - Global

KW - Spatial

KW - Species richness

KW - Temporal

KW - Turnover

U2 - 10.1111/geb.12729

DO - 10.1111/geb.12729

M3 - Article

SN - 1466-822X

VL - 27

SP - 760

EP - 786

JO - Global Ecology and Biogeography

JF - Global Ecology and Biogeography

IS - 7

ER -

BioTIME: a database of biodiversity time series for the Anthropocene

Abstract

Keywords

UN SDGs

Access to Document

Fingerprint

Projects

Institutional Strategic Support Fund 2: ISSF 2

BioTIME: ERC Advanced Grant - BioTime

Datasets

Widespread and diverging patterns of change in local phylogenetic diversity

BioTIME

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