Approximate Bayesian Computation (ABC) in practice

Katalin Csillery*, Michael G. B. Blum, Oscar E. Gaggiotti, Olivier Francois

*Corresponding author for this work

Research output: Contribution to journalReview articlepeer-review

Abstract

Understanding the forces that influence natural variation within and among populations has been a major objective of evolutionary biologists for decades. Motivated by the growth in computational power and data complexity, modern approaches to this question make intensive use of simulation methods. Approximate Bayesian Computation (ABC) is one of these methods. Here we review the foundations of ABC, its recent algorithmic developments, and its applications in evolutionary biology and ecology. We argue that the use of ABC should incorporate all aspects of Bayesian data analysis: formulation, fitting, and improvement of a model. ABC can be a powerful tool to make inferences with complex models if these principles are carefully applied.

Original languageEnglish
Pages (from-to)410-418
Number of pages9
JournalTrends in Ecology and Evolution
Volume25
Issue number7
DOIs
Publication statusPublished - Jul 2010

Keywords

  • DYNAMICAL-SYSTEMS
  • DEMOGRAPHIC HISTORY
  • MODEL SELECTION
  • DNA-SEQUENCE DATA
  • GENETIC DIVERSITY
  • COALESCENT SIMULATION
  • CHAIN MONTE-CARLO
  • POPULATION HISTORY
  • DROSOPHILA-MELANOGASTER
  • STATISTICAL EVALUATION

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