An open resource for non-human primate imaging

Michael P. Milham; Lei Ai; Bonhwang Koo; Ting Xu; Céline Amiez; Fabien Balezeau; Mark G. Baxter; Erwin L.A. Blezer; Thomas Brochier; Aihua Chen; Paula L. Croxson; Christienne G. Damatac; Stanislas Dehaene; Stefan Everling; Damian A. Fair; Lazar Fleysher; Winrich Freiwald; Sean Froudist-Walsh; Timothy D. Griffiths; Carole Guedj; Fadila Hadj-Bouziane; Suliann Ben Hamed; Noam Harel; Bassem Hiba; Bechir Jarraya; Benjamin Jung; Sabine Kastner; P. Christiaan Klink; Sze Chai Kwok; Kevin N. Laland; David A. Leopold; Patrik Lindenfors; Rogier B. Mars; Ravi S. Menon; Adam Messinger; Martine Meunier; Kelvin Mok; John H. Morrison; Jennifer Nacef; Jamie Nagy; Michael Ortiz Rios; Christopher I. Petkov; Mark Pinsk; Colline Poirier; Emmanuel Procyk; Reza Rajimehr; Simon M. Reader; Pieter R. Roelfsema; David A. Rudko; Matthew F.S. Rushworth; Brian E. Russ; Jerome Sallet; Michael Christoph Schmid; Caspar M. Schwiedrzik; Jakob Seidlitz; Julien Sein; Amir Shmuel; Elinor L. Sullivan; Leslie Ungerleider; Alexander Thiele; Orlin S. Todorov; Doris Tsao; Zheng Wang; Charles R.E. Wilson; Essa Yacoub; Frank Q. Ye; Wilbert Zarco; Yong-di Zhou; Daniel S. Margulies; Charles E. Schroeder

doi:10.1016/j.neuron.2018.08.039

An open resource for non-human primate imaging

Michael P. Milham, Lei Ai, Bonhwang Koo, Ting Xu, Céline Amiez, Fabien Balezeau, Mark G. Baxter, Erwin L.A. Blezer, Thomas Brochier, Aihua Chen, Paula L. Croxson, Christienne G. Damatac, Stanislas Dehaene, Stefan Everling, Damian A. Fair, Lazar Fleysher, Winrich Freiwald, Sean Froudist-Walsh, Timothy D. Griffiths, Carole GuedjFadila Hadj-Bouziane, Suliann Ben Hamed, Noam Harel, Bassem Hiba, Bechir Jarraya, Benjamin Jung, Sabine Kastner, P. Christiaan Klink, Sze Chai Kwok, Kevin N. Laland, David A. Leopold, Patrik Lindenfors, Rogier B. Mars, Ravi S. Menon, Adam Messinger, Martine Meunier, Kelvin Mok, John H. Morrison, Jennifer Nacef, Jamie Nagy, Michael Ortiz Rios, Christopher I. Petkov, Mark Pinsk, Colline Poirier, Emmanuel Procyk, Reza Rajimehr, Simon M. Reader, Pieter R. Roelfsema, David A. Rudko, Matthew F.S. Rushworth, Brian E. Russ, Jerome Sallet, Michael Christoph Schmid, Caspar M. Schwiedrzik, Jakob Seidlitz, Julien Sein, Amir Shmuel, Elinor L. Sullivan, Leslie Ungerleider, Alexander Thiele, Orlin S. Todorov, Doris Tsao, Zheng Wang, Charles R.E. Wilson, Essa Yacoub, Frank Q. Ye, Wilbert Zarco, Yong-di Zhou, Daniel S. Margulies, Charles E. Schroeder

Research output: Contribution to journal › Article › peer-review

Abstract

Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

Original language	English
Article number	e2
Pages (from-to)	61-74
Journal	Neuron
Volume	100
Issue number	1
Early online date	27 Sept 2018
DOIs	https://doi.org/10.1016/j.neuron.2018.08.039
Publication status	Published - 10 Oct 2018

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Milham_2018_Neuron_OpenResource_CC
Copyright © 2018 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
Final published version, 4.51 MBLicence: CC BY

An open resource for non-human primate imaging (PRIME-DE data release)
Milham, M. P. (Creator), Ai, L. (Creator), Koo, B. (Creator), Xu, T. (Creator), Amiez, C. (Creator), Balezeau, F. (Creator), Baxter, M. G. (Creator), Blezer, E. L. A. (Creator), Brochier, T. (Creator), Chen, A. (Creator), Croxson, P. L. (Creator), Damatac, C. G. (Creator), Dehaene, S. (Creator), Everling, S. (Creator), Fair, D. A. (Creator), Fleysher, L. (Creator), Freiwald, W. (Creator), Froudist-Walsh, S. (Creator), Griffiths, T. D. (Creator), Guedj, C. (Creator), Hadj-Bouziane, F. (Creator), Ben Hamed, S. (Creator), Harel, N. (Creator), Hiba, B. (Creator), Jarraya, B. (Creator), Jung, B. (Creator), Kastner, S. (Creator), Klink, P. C. (Creator), Kwok, S. C. (Creator), Laland, K. N. (Data Collector), Leopold, D. A. (Creator), Lindenfors, P. (Creator), Mars, R. B. (Creator), Menon, R. S. (Creator), Messinger, A. (Creator), Meunier, M. (Creator), Mok, K. (Creator), Morrison, J. H. (Creator), Nacef, J. (Creator), Nagy, J. (Creator), Rios, M. O. (Creator), Petkov, C. I. (Creator), Pinsk, M. (Creator), Poirier, C. (Creator), Procyk, E. (Creator), Rajimehr, R. (Creator), Reader, S. M. (Creator), Roelfsema, P. R. (Creator), Rudko, D. A. (Creator), Rushworth, M. F. S. (Creator), Russ, B. E. (Creator), Sallet, J. (Creator), Schmid, M. C. (Creator), Schwiedrzik, C. M. (Creator), Seidlitz, J. (Creator), Sein, J. (Creator), Shmuel, A. (Creator), Sullivan, E. L. (Creator), Ungerleider, L. (Creator), Thiele, A. (Creator), Todorov, O. S. (Creator), Tsao, D. (Creator), Wang, Z. (Creator), Wilson, C. R. E. (Creator), Yacoub, E. (Creator), Ye, F. Q. (Creator), Zarco, W. (Creator), Zhou, Y.-D. (Creator), Margulies, D. S. (Creator) & Schroeder, C. E. (Creator), Neuroimaging Informatics Tools and Resources Clearinghouse, 2018
http://fcon_1000.projects.nitrc.org/indi/indiPRIME.html
Dataset

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Milham, M. P., Ai, L., Koo, B., Xu, T., Amiez, C., Balezeau, F., Baxter, M. G., Blezer, E. L. A., Brochier, T., Chen, A., Croxson, P. L., Damatac, C. G., Dehaene, S., Everling, S., Fair, D. A., Fleysher, L., Freiwald, W., Froudist-Walsh, S., Griffiths, T. D., ... Schroeder, C. E. (2018). An open resource for non-human primate imaging. Neuron, 100(1), 61-74. Article e2. https://doi.org/10.1016/j.neuron.2018.08.039

@article{5eb74b685f0b408489812fd1c2e9ba40,

title = "An open resource for non-human primate imaging",

abstract = "Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.",

author = "Milham, {Michael P.} and Lei Ai and Bonhwang Koo and Ting Xu and C{\'e}line Amiez and Fabien Balezeau and Baxter, {Mark G.} and Blezer, {Erwin L.A.} and Thomas Brochier and Aihua Chen and Croxson, {Paula L.} and Damatac, {Christienne G.} and Stanislas Dehaene and Stefan Everling and Fair, {Damian A.} and Lazar Fleysher and Winrich Freiwald and Sean Froudist-Walsh and Griffiths, {Timothy D.} and Carole Guedj and Fadila Hadj-Bouziane and {Ben Hamed}, Suliann and Noam Harel and Bassem Hiba and Bechir Jarraya and Benjamin Jung and Sabine Kastner and Klink, {P. Christiaan} and Kwok, {Sze Chai} and Laland, {Kevin N.} and Leopold, {David A.} and Patrik Lindenfors and Mars, {Rogier B.} and Menon, {Ravi S.} and Adam Messinger and Martine Meunier and Kelvin Mok and Morrison, {John H.} and Jennifer Nacef and Jamie Nagy and Rios, {Michael Ortiz} and Petkov, {Christopher I.} and Mark Pinsk and Colline Poirier and Emmanuel Procyk and Reza Rajimehr and Reader, {Simon M.} and Roelfsema, {Pieter R.} and Rudko, {David A.} and Rushworth, {Matthew F.S.} and Russ, {Brian E.} and Jerome Sallet and Schmid, {Michael Christoph} and Schwiedrzik, {Caspar M.} and Jakob Seidlitz and Julien Sein and Amir Shmuel and Sullivan, {Elinor L.} and Leslie Ungerleider and Alexander Thiele and Todorov, {Orlin S.} and Doris Tsao and Zheng Wang and Wilson, {Charles R.E.} and Essa Yacoub and Ye, {Frank Q.} and Wilbert Zarco and Yong-di Zhou and Margulies, {Daniel S.} and Schroeder, {Charles E.}",

note = "Primary support for the work by E.L.A.B., O.S.T., P.L., K.N.L., and S.M.R. was provided by the John Templeton Foundation, the Canada Foundation for Innovation, and the Anna-Greta och Holger Crafoords Stiftelse.",

year = "2018",

month = oct,

day = "10",

doi = "10.1016/j.neuron.2018.08.039",

language = "English",

volume = "100",

pages = "61--74",

journal = "Neuron",

issn = "0896-6273",

publisher = "Cell Press",

number = "1",

}

Milham, MP, Ai, L, Koo, B, Xu, T, Amiez, C, Balezeau, F, Baxter, MG, Blezer, ELA, Brochier, T, Chen, A, Croxson, PL, Damatac, CG, Dehaene, S, Everling, S, Fair, DA, Fleysher, L, Freiwald, W, Froudist-Walsh, S, Griffiths, TD, Guedj, C, Hadj-Bouziane, F, Ben Hamed, S, Harel, N, Hiba, B, Jarraya, B, Jung, B, Kastner, S, Klink, PC, Kwok, SC, Laland, KN, Leopold, DA, Lindenfors, P, Mars, RB, Menon, RS, Messinger, A, Meunier, M, Mok, K, Morrison, JH, Nacef, J, Nagy, J, Rios, MO, Petkov, CI, Pinsk, M, Poirier, C, Procyk, E, Rajimehr, R, Reader, SM, Roelfsema, PR, Rudko, DA, Rushworth, MFS, Russ, BE, Sallet, J, Schmid, MC, Schwiedrzik, CM, Seidlitz, J, Sein, J, Shmuel, A, Sullivan, EL, Ungerleider, L, Thiele, A, Todorov, OS, Tsao, D, Wang, Z, Wilson, CRE, Yacoub, E, Ye, FQ, Zarco, W, Zhou, Y, Margulies, DS & Schroeder, CE 2018, 'An open resource for non-human primate imaging', Neuron, vol. 100, no. 1, e2, pp. 61-74. https://doi.org/10.1016/j.neuron.2018.08.039

TY - JOUR

T1 - An open resource for non-human primate imaging

AU - Milham, Michael P.

AU - Ai, Lei

AU - Koo, Bonhwang

AU - Xu, Ting

AU - Amiez, Céline

AU - Balezeau, Fabien

AU - Baxter, Mark G.

AU - Blezer, Erwin L.A.

AU - Brochier, Thomas

AU - Chen, Aihua

AU - Croxson, Paula L.

AU - Damatac, Christienne G.

AU - Dehaene, Stanislas

AU - Everling, Stefan

AU - Fair, Damian A.

AU - Fleysher, Lazar

AU - Freiwald, Winrich

AU - Froudist-Walsh, Sean

AU - Griffiths, Timothy D.

AU - Guedj, Carole

AU - Hadj-Bouziane, Fadila

AU - Ben Hamed, Suliann

AU - Harel, Noam

AU - Hiba, Bassem

AU - Jarraya, Bechir

AU - Jung, Benjamin

AU - Kastner, Sabine

AU - Klink, P. Christiaan

AU - Kwok, Sze Chai

AU - Laland, Kevin N.

AU - Leopold, David A.

AU - Lindenfors, Patrik

AU - Mars, Rogier B.

AU - Menon, Ravi S.

AU - Messinger, Adam

AU - Meunier, Martine

AU - Mok, Kelvin

AU - Morrison, John H.

AU - Nacef, Jennifer

AU - Nagy, Jamie

AU - Rios, Michael Ortiz

AU - Petkov, Christopher I.

AU - Pinsk, Mark

AU - Poirier, Colline

AU - Procyk, Emmanuel

AU - Rajimehr, Reza

AU - Reader, Simon M.

AU - Roelfsema, Pieter R.

AU - Rudko, David A.

AU - Rushworth, Matthew F.S.

AU - Russ, Brian E.

AU - Sallet, Jerome

AU - Schmid, Michael Christoph

AU - Schwiedrzik, Caspar M.

AU - Seidlitz, Jakob

AU - Sein, Julien

AU - Shmuel, Amir

AU - Sullivan, Elinor L.

AU - Ungerleider, Leslie

AU - Thiele, Alexander

AU - Todorov, Orlin S.

AU - Tsao, Doris

AU - Wang, Zheng

AU - Wilson, Charles R.E.

AU - Yacoub, Essa

AU - Ye, Frank Q.

AU - Zarco, Wilbert

AU - Zhou, Yong-di

AU - Margulies, Daniel S.

AU - Schroeder, Charles E.

N1 - Primary support for the work by E.L.A.B., O.S.T., P.L., K.N.L., and S.M.R. was provided by the John Templeton Foundation, the Canada Foundation for Innovation, and the Anna-Greta och Holger Crafoords Stiftelse.

PY - 2018/10/10

Y1 - 2018/10/10

N2 - Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

AB - Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.

U2 - 10.1016/j.neuron.2018.08.039

DO - 10.1016/j.neuron.2018.08.039

M3 - Article

SN - 0896-6273

VL - 100

SP - 61

EP - 74

JO - Neuron

JF - Neuron

IS - 1

M1 - e2

ER -

An open resource for non-human primate imaging

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An open resource for non-human primate imaging (PRIME-DE data release)

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