Advances in approximate Bayesian inference for models in epidemiology

Xiahui Li*, Fergus Chadwick, Ben Swallow

*Corresponding author for this work

Research output: Contribution to journalReview articlepeer-review

Abstract

Bayesian inference methods are useful in infectious diseases modeling due to their capability to propagate uncertainty, manage sparse data, incorporate latent structures, and address high-dimensional parameter spaces. However, parameter inference through assimilation of observational data in these models remains challenging. While asymptotically exact Bayesian methods offer theoretical guarantees for accurate inference, they can be computationally demanding and impractical for real-time outbreak analysis. This review synthesizes recent advances in approximate Bayesian inference methods that aim to balance inferential accuracy with scalability. We focus on four prominent families: Approximate Bayesian Computation, Bayesian Synthetic Likelihood, Integrated Nested Laplace Approximation, and Variational Inference. For each method, we evaluate its relevance to epidemiological applications, emphasizing innovations that improve both computational efficiency and inference accuracy. We also offer practical guidance on method selection across a range of modeling scenarios. Finally, we identify hybrid exact approximate inference as a promising frontier that combines methodological rigor with the scalability needed for the response to outbreaks. This review provides epidemiologists with a conceptual framework to navigate the trade-off between statistical accuracy and computational feasibility in contemporary disease modeling.
Original languageEnglish
Article number100855
Number of pages13
JournalEpidemics
Volume53
Early online date23 Sept 2025
DOIs
Publication statusPublished - 1 Dec 2025

Keywords

  • Approximate Bayesian inference
  • Approximate Bayesian computation
  • Synthetic likelihood
  • INLA
  • Variational inference
  • Calibration
  • Compartmental models
  • Epidemiology
  • Infectious disease models

Fingerprint

Dive into the research topics of 'Advances in approximate Bayesian inference for models in epidemiology'. Together they form a unique fingerprint.

Cite this