TY - JOUR
T1 - A study on time discretization and adaptive mesh refinement methods for the simulation of cancer invasion
T2 - The urokinase model
AU - Kolbe, Niklas
AU - Kat'Uchová, Jana
AU - Sfakianakis, Nikolaos
AU - Hellmann, Nadja
AU - Lukáčová-Medvid'Ová, Mária
N1 - Funding Information:
We gratefully acknowledge the support of the Center of Computational Sciences Mainz and the Internal University Research Funding of the Johannes-Gutenberg University of Mainz (Ref. Nr. 8502084 ). N. Sfakianakis also wishes also to acknowledge the support of the Alexander von Humboldt Foundation ( 3.3-GRI/1145533 ).
Publisher Copyright:
© 2015 Elsevier Inc. All rights reserved.
PY - 2016/1/15
Y1 - 2016/1/15
N2 - In the present work we investigate a model that describes the chemotactically and proteolytically driven tissue invasion by cancer cells. The model is a system of advection-reaction-diffusion equations that takes into account the role of the serine protease urokinase-type plasminogen activator. The analytical and numerical study of such a system constitutes a challenge due to the merging, emerging, and traveling concentrations that the solutions exhibit. Classical numerical methods applied to this system necessitate very fine discretization grids to resolve these dynamics in an accurate way. To reduce the computational cost without sacrificing the accuracy of the solution, we apply adaptive mesh refinement techniques, in particular h-refinement. Extended numerical experiments show that this approach provides with a higher order, stable, and robust numerical method for this system. We elaborate on several mesh refinement criteria and compare the results with the ones in the literature. We prove, for a simpler version of this model, L∞ bounds for the solutions. We also studied the stability of its conditional steady states, and conclude that it can serve as a test case for further development of mesh refinement techniques for cancer invasion simulations.
AB - In the present work we investigate a model that describes the chemotactically and proteolytically driven tissue invasion by cancer cells. The model is a system of advection-reaction-diffusion equations that takes into account the role of the serine protease urokinase-type plasminogen activator. The analytical and numerical study of such a system constitutes a challenge due to the merging, emerging, and traveling concentrations that the solutions exhibit. Classical numerical methods applied to this system necessitate very fine discretization grids to resolve these dynamics in an accurate way. To reduce the computational cost without sacrificing the accuracy of the solution, we apply adaptive mesh refinement techniques, in particular h-refinement. Extended numerical experiments show that this approach provides with a higher order, stable, and robust numerical method for this system. We elaborate on several mesh refinement criteria and compare the results with the ones in the literature. We prove, for a simpler version of this model, L∞ bounds for the solutions. We also studied the stability of its conditional steady states, and conclude that it can serve as a test case for further development of mesh refinement techniques for cancer invasion simulations.
KW - Adaptive mesh refinement
KW - Cancer modeling
KW - Chemotaxis
KW - Finite volume method
KW - IMEX
KW - Merging and emerging concentrations
U2 - 10.1016/j.amc.2015.08.023
DO - 10.1016/j.amc.2015.08.023
M3 - Article
AN - SCOPUS:84946145232
SN - 0096-3003
VL - 273
SP - 353
EP - 376
JO - Applied Mathematics and Computation
JF - Applied Mathematics and Computation
ER -