ISSF 2

2024

A GWAS for grip strength in cohorts of children—advantages of analysing young participants for this trait

Abbondanza, F., Wang, C. A., Schmitz, J., Marianski, K., Pennell, C. E., Whitehouse, A. J. O. & Paracchini, S., 8 Oct 2024, In: Genes, Brain and Behavior. 23, 5, 10 p., e70003.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Evidence for gene flow and trait reversal during radiation of Mexican Goodeid fish

Yusuf, L. H., Saldivar Lemus, Y., Thorpe, P., Garcia, C. M. & Ritchie, M. G., 10 Jun 2024, (E-pub ahead of print) In: Heredity. 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Temporal genomics in Hawaiian crickets reveals compensatory intragenomic coadaptation during adaptive evolution

Zhang, X., Blaxter, M., Wood, J. M. D., Tracey, A., McCarthy, S., Thorpe, P., Rayner, J. G., Zhang, S., Sikkink, K. L., Balenger, S. L. & Bailey, N. W., 12 Jun 2024, In: Nature Communications. 15, 1, 5001.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2023

Bait-ER: a Bayesian method to detect targets of selection in Evolve-and-Resequence experiments

Barata, C., Borges, R. & Kosiol, C., 9 Jan 2023, In: Journal of Evolutionary Biology. 36, 1, p. 29-44 16 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Genomic signatures associated with transitions to viviparity in Cyprinodontiformes

Yusuf, L. H., Saldívar Lemus, Y., Thorpe, P., Macías Garcia, C. & Ritchie, M. G., Oct 2023, In: Molecular Biology and Evolution. 40, 10, 16 p., msad208.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Identification of loci involved in childhood visual acuity and associations with cognitive skills and educational attainment

Schmitz, J., Abbondanza, F., Marianski, K., Luciano, M. & Paracchini, S., 25 Jul 2023, In: npj Science of Learning. 8, 10 p., 25.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Selection on the fly: short-term adaptation to an altered sexual selection regime in Drosophila pseudoobscura

Barata, C., Snook, R. R., Ritchie, M. G. & Kosiol, C., 4 Jul 2023, In: Genome Biology and Evolution. 15, 7, 18 p., evad113.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Temporal dynamics of Na/K pump mediated memory traces: insights from conductance-based models of Drosophila neurons

Megwa, O. F., Pascual, L. M., Günay, C., Pulver, S. R. & Prinz, A. A., 22 May 2023, In: Frontiers in Neuroscience. 17, 18 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2022

Comparative genomics among cyst nematodes reveals distinct evolutionary histories among effector families and an irregular distribution of effector-associated promoter motifs

van Steenbrugge, J. J. M., van den Elsen, S., Holterman, M., Lozano-Torres, J. L., Putker, V., Thorpe, P., Goverse, A., Sterken, M. G., Smant, G. & Helder, J., 1 Jun 2022, (E-pub ahead of print) In: Molecular Ecology. Early View, 16505.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Condensation properties of stress granules and processing bodies are compromised in myotonic dystrophy type 1

Gulyurtlu, S., Magon, M. S., Guest, P. N., Papavasiliou, P. P., Morrison, K., Prescott, A. & Sleeman, J. E., 2 Aug 2022, In: Disease Models & Mechanisms. 15, 7, dmm049294.

Research output: Contribution to journal › Article › peer-review

Open Access

File

De novo assembly of Plasmodium knowlesi genomes from clinical samples explain the counterintuitive intrachromosomal organization of variant SICAvar and kir multiple gene family members

Oresegun, D. R., Thorpe, P., Benavente, E. D., Campino, S., Fauzi, M., Moon, R. W., Clark, T. G. & Cox-Singh, J., 23 May 2022, In: Frontiers in Genetics. 13, 16 p., 855052.

Research output: Contribution to journal › Article › peer-review

Open Access

File

KIAA0319 influences cilia length, cell migration and mechanical cell-substrate interaction

Diaz, R., Kronenberg, N. M., Martinelli, A., Liehm, P., Riches, A. C., Gather, M. C. & Paracchini, S., 14 Jan 2022, In: Scientific Reports. 12, 12 p., 722.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Localization of muscarinic acetylcholine receptor dependent rhythm generating modules in the Drosophila larval locomotor network

Jonaitis, J., MacLeod, J. & Pulver, S. R., 15 Apr 2022, In: Journal of Neurophysiology. 127, 4, p. 1098-1116

Research output: Contribution to journal › Article › peer-review

Open Access

File

Presence of optrA-mediated linezolid resistance in multiple lineages and plasmids of Enterococcus faecalis revealed by long read sequencing

McHugh, M. P., Parcell, B. J., Pettigrew, K. A., Toner, G., Khatamzas, E., el Sakka, N., Karcher, A. M., Walker, J., Weir, R., Meunier, D., Hopkins, K. L., Woodford, N., Templeton, K. E., Gillespie, S. H. & Holden, M. T. G., 7 Feb 2022, In: Microbiology. 168, 2, 7 p., 001137.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Quantitative multidimensional phenotypes improve genetic analysis of laterality traits

Schmitz, J., Zheng, M., Lui, K. F. H., McBride, C., Ho, C.S.-H. & Paracchini, S., 19 Feb 2022, In: Translational Psychiatry. 12, 8 p., 68.

Research output: Contribution to journal › Article › peer-review

Open Access

File

The genome and lifestage-specific transcriptomes of a plant-parasitic nematode and its host reveal susceptibility genes involved in trans-kingdom synthesis of vitamin B5

Siddique, S., Radakovic, Z. S., Hiltl, C., Pellegrin, C., Baum, T. J., Beasley, H., Bent, A. F., Chitambo, O., Chopra, D., Danchin, E. G. J., Grenier, E., Habash, S. S., Hasan, M. S., Helder, J., Hewezi, T., Holbein, J., Holterman, M., Janakowski, S., Koutsovoulos, G. D. & Kranse, O. P. & 13 others, Lozano-Torres, J. L., Maier, T. R., Masonbrink, R. E., Mendy, B., Riemer, E., Sobczak, M., Sonawala, U., Sterken, M. G., Thorpe, P., van Steenbrugge, J. J. M., Zahid, N., Grundler, F. & Eves-van den Akker, S., 19 Oct 2022, In: Nature Communications. 13, 19 p., 6190.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Treatment of missing data in Bayesian network structure learning: an application to linked biomedical and social survey data

Ke, X., Keenan, K. L. & Smith, V. A., 19 Dec 2022, In: BMC Medical Research Methodology. 22, 16 p., 326.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Tumour-associated antigenic peptides are present in the HLA class I ligandome of cancer cell line derived extracellular vesicles

Kumar, P., Boyne, C., Brown, S. E., Qureshi, A., Thorpe, P. J., Synowsky, S. A., Shirran, S. L. & Powis, S. J., 1 Jun 2022, In: Immunology. 166, 2, p. 249-264 15 p., 13471.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2021

A rare missense variant in the ATP2C2 gene is associated with language impairment and related measures

Martinelli, A., Rice, M., Talcott, J. B., Diaz, R., Smith, S., Hashim Raza, M., Snowling, M. J., Hulme, C., Stein, J., Hayiou-Thomas, M. E., Hawi, Z., Kent, L., Pitt, S. J., Newbury, D. F. & Paracchini, S., 15 Jun 2021, In: Human Molecular Genetics. 30, 12, p. 1160–1171 12 p., ddab111.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae

Thorpe, P., Vetukuri, R. R., Hedley, P. E., Morris, J., Whisson, M. A., Welsh, L. R. J. & Whisson, S. C., 1 Nov 2021, In: G3: Genes, Genomes, Genetics. 11, 11, 8 p., jkab282.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Experimental evolution supports signatures of sexual selection in genomic divergence

Wiberg, R. A. W., Veltsos, P., Snook, R. & Ritchie, M. G., Jun 2021, In: Evolution Letters. 5, 3, p. 214-229 16 p., 220.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Genome-wide association study and polygenic risk score analysis for hearing measures in children

Schmitz, J., Abbondanza, F. & Paracchini, S., 3 Sept 2021, (E-pub ahead of print) In: American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics . Early View, 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Long-term culture of SH-SY5Y neuroblastoma cells in the absence of neurotrophins: a novel model of neuronal ageing

Strother, L., Miles, G. B., Holiday, A. R., Cheng, Y. & Doherty, G. H., 1 Oct 2021, In: Journal of Neuroscience Methods. 362, 109301.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Plasmodium knowlesi – clinical isolate genome sequencing to inform translational same-species model system for severe malaria

Oresegun, D. R., Daneshvar, C. & Cox-Singh, J., 2 Mar 2021, In: Frontiers in Cellular and Infection Microbiology. 11, 8 p., 607686.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Rapid parallel adaptation despite gene flow in silent crickets

Zhang, X., Rayner, J. G., Blaxter, M. & Bailey, N. W., 4 Jan 2021, In: Nature Communications. 12, 15 p., 50.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Regulation of coordinated muscular relaxation in Drosophila larvae by a pattern-regulating intersegmental circuit

Hiramoto, A., Jonaitis, J., Niki, S., Kohsaka, H., Fetter, R. D., Cardona, A., Pulver, S. R. & Nose, A., 19 May 2021, In: Nature Communications. 12, 14 p., 2943.

Research output: Contribution to journal › Article › peer-review

Open Access

File

The shape of species abundance distributions across spatial scales

Antão, L. H., Magurran, A. E. & Dornelas, M., 7 Apr 2021, In: Frontiers in Ecology and Evolution. 9, 11 p., 626730.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2020

Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild

Pascoal, S., Risse, J. E., Zhang, X., Blaxter, M., Cezard, T., Challis, R. J., Gharbi, K., Hunt, J., Kumar, S., Langan, E., Liu, X., Rayner, J. G., Ritchie, M. G., Snoek, B. L., Trivedi, U. & Bailey, N. W., 7 Feb 2020, In: Evolution Letters. 4, 1, p. 19-33 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses

Kapun, M., Barrón, M. G., Staubach, F., Obbard, D. J., Wiberg, R. A. W., Vieira, J., Goubert, C., Rota-Stabelli, O., Kankare, M., Bogaerts-Márquez, M., Haudry, A., Waidele, L., Kozeretska, I., Pasyukova, E. G., Loeschcke, V., Pascual, M., Vieira, C. P., Serga, S., Montchamp-Moreau, C. & Abbott, J. & 25 others, Gibert, P., Porcelli, D., Posnien, N., Sánchez-Gracia, A., Grath, S., Sucena, É., Bergland, A. O., Guerreiro, M. P. G., Onder, B. S., Argyridou, E., Guio, L., Schou, M. F., Deplancke, B., Vieira, C., Ritchie, M. G., Zwaan, B. J., Tauber, E., Orengo, D. J., Puerma, E., Aguadé, M., Schmidt, P., Parsch, J., Betancourt, A. J., Flatt, T. & González, J., 1 Sept 2020, In: Molecular Biology and Evolution. 37, 9, p. 2661-2678 18 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Signatures of adaptation to a monocot host in the plant-parasitic cyst nematode Heterodera sacchari

Pokhare, S. S., Thorpe, P., Hedley, P., Morris, J., Habash, S. S., Elashry, A., Eves-van den Akker, S., Grundler, F. M. W. & Jones, J., 17 Aug 2020, In: The Plant Journal. 103, 4, p. 1263-1274 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Temperature-related biodiversity change across temperate marine and terrestrial systems

Antão, L. H., Bates, A. E., Blowes, S. A., Waldock, C., Supp, S. R., Magurran, A. E., Dornelas, M. & Schipper, A. M., 4 May 2020, (E-pub ahead of print) In: Nature Ecology and Evolution.

Research output: Contribution to journal › Article › peer-review

Open Access

The genomic impact of selection for virulence against resistance in the potato cyst nematode, Globodera pallida

Varypatakis, K., Véronneau, P.-Y., Thorpe, P., Cock, P. J. A., Tze- Yin Lim, J., Armstrong, M. R., Janakowski, S., Sobczak, M., Hein, I., Mimee, B., Jones, J. & Blok, V., 28 Nov 2020, In: Genes. 11, 12, 21 p., 1429.

Research output: Contribution to journal › Article › peer-review

Open Access

File

The reliability of pseudoneglect is task dependent

Mitchell, A. G., Harris, J., Benstock, S. E. & Ales, J. M., Nov 2020, In: Neuropsychologia. 148, 10 p., 107618.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Transcriptional changes in the aphid species Myzus cerasi under different host and environmental conditions

Thorpe, P., Escudero-Martinez, C. M., Eves-van den Akker, S. & Bos, J. I. B., 13 Jan 2020, (E-pub ahead of print) In: Insect Molecular Biology. Early View, 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2019

Polymorphism-aware species trees with advanced mutation models, bootstrap and rate heterogeneity

Schrempf, D., Minh, B. Q., von Haeseler, A. & Kosiol, C., Jun 2019, In: Molecular Biology and Evolution. 36, 6, p. 1294-1301 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Release from intralocus sexual conflict? Evolved loss of a male sexual trait demasculinizes female gene expression

Rayner, J., Pascoal, S. C. M. & Bailey, N. W., 17 Apr 2019, In: Proceedings of the Royal Society B: Biological Sciences. 286, 1901, 8 p., 20190497.

Research output: Contribution to journal › Article › peer-review

Open Access

File

The ATP-dependent chromatin remodelling enzyme Uls1 prevents Topoisomerase II poisoning

Swanston, A., Zabrady, K. & Ferreira, H. C., 9 Jul 2019, In: Nucleic Acids Research. 47, 12, p. 6172–6183 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

β-diversity scaling patterns are consistent across metrics and taxa

Antão, L. H., McGill, B., Magurran, A. E., Soares, A. & Dornelas, M., May 2019, In: Ecography. 42, 5, p. 1012-1023

Research output: Contribution to journal › Article › peer-review

Open Access

File

2018

BioTIME: a database of biodiversity time series for the Anthropocene

Dornelas, M., Antão, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., Akhmetzhanova, A. A., Appeltans, W., Arcos, J. M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A. H., Barbosa, M., Barreto, T. E., Bässler, C., Bellgrove, A., Belmaker, J., Benedetti-cecchi, L. & Bett, B. J. & 250 others, Bjorkman, A. D., Błażewicz, M., Blowes, S. A., Bloch, C. P., Bonebrake, T. C., Boyd, S., Bradford, M., Brooks, A. J., Brown, J. H., Bruelheide, H., Budy, P., Carvalho, F., Castañeda-moya, E., Chen, C. A., Chamblee, J. F., Chase, T. J., Siegwart Collier, L., Collinge, S. K., Condit, R., Cooper, E. J., Cornelissen, J. H. C., Cotano, U., Kyle Crow, S., Damasceno, G., Davies, C. H., Davis, R. A., Day, F. P., Degraer, S., Doherty, T. S., Dunn, T. E., Durigan, G., Duffy, J. E., Edelist, D., Edgar, G. J., Elahi, R., Elmendorf, S. C., Enemar, A., Ernest, S. K. M., Escribano, R., Estiarte, M., Evans, B. S., Fan, T.-Y., Turini Farah, F., Loureiro Fernandes, L., Farneda, F. Z., Fidelis, A., Fitt, R., Fosaa, A. M., Daher Correa Franco, G. A., Frank, G. E., Fraser, W. R., García, H., Cazzolla Gatti, R., Givan, O., Gorgone-barbosa, E., Gould, W. A., Gries, C., Grossman, G. D., Gutierréz, J. R., Hale, S., Harmon, M. E., Harte, J., Haskins, G., Henshaw, D. L., Hermanutz, L., Hidalgo, P., Higuchi, P., Hoey, A., Van Hoey, G., Hofgaard, A., Holeck, K., Hollister, R. D., Holmes, R., Hoogenboom, M., Hsieh, C.-H., Hubbell, S. P., Huettmann, F., Huffard, C. L., Hurlbert, A. H., Macedo Ivanauskas, N., Janík, D., Jandt, U., Jażdżewska, A., Johannessen, T., Johnstone, J., Jones, J., Jones, F. A. M., Kang, J., Kartawijaya, T., Keeley, E. C., Kelt, D. A., Kinnear, R., Klanderud, K., Knutsen, H., Koenig, C. C., Kortz, A. R., Král, K., Kuhnz, L. A., Kuo, C.-Y., Kushner, D. J., Laguionie-marchais, C., Lancaster, L. T., Min Lee, C., Lefcheck, J. S., Lévesque, E., Lightfoot, D., Lloret, F., Lloyd, J. D., López-baucells, A., Louzao, M., Madin, J. S., Magnússon, B., Malamud, S., Matthews, I., Mcfarland, K. P., Mcgill, B., Mcknight, D., Mclarney, W. O., Meador, J., Meserve, P. L., Metcalfe, D. J., Meyer, C. F. J., Michelsen, A., Milchakova, N., Moens, T., Moland, E., Moore, J., Mathias Moreira, C., Müller, J., Murphy, G., Myers-smith, I. H., Myster, R. W., Naumov, A., Neat, F., Nelson, J. A., Paul Nelson, M., Newton, S. F., Norden, N., Oliver, J. C., Olsen, E. M., Onipchenko, V. G., Pabis, K., Pabst, R. J., Paquette, A., Pardede, S., Paterson, D. M., Pélissier, R., Peñuelas, J., Pérez-matus, A., Pizarro, O., Pomati, F., Post, E., Prins, H. H. T., Priscu, J. C., Provoost, P., Prudic, K. L., Pulliainen, E., Ramesh, B. R., Mendivil Ramos, O., Rassweiler, A., Rebelo, J. E., Reed, D. C., Reich, P. B., Remillard, S. M., Richardson, A. J., Richardson, J. P., Van Rijn, I., Rocha, R., Rivera-monroy, V. H., Rixen, C., Robinson, K. P., Ribeiro Rodrigues, R., De Cerqueira Rossa-feres, D., Rudstam, L., Ruhl, H., Ruz, C. S., Sampaio, E. M., Rybicki, N., Rypel, A., Sal, S., Salgado, B., Santos, F. A. M., Savassi-coutinho, A. P., Scanga, S., Schmidt, J., Schooley, R., Setiawan, F., Shao, K.-T., Shaver, G. R., Sherman, S., Sherry, T. W., Siciński, J., Sievers, C., Da Silva, A. C., Rodrigues Da Silva, F., Silveira, F. L., Slingsby, J., Smart, T., Snell, S. J., Soudzilovskaia, N. A., Souza, G. B. G., Maluf Souza, F., Castro Souza, V., Stallings, C. D., Stanforth, R., Stanley, E. H., Mauro Sterza, J., Stevens, M., Stuart-smith, R., Rondon Suarez, Y., Supp, S., Yoshio Tamashiro, J., Tarigan, S., Thiede, G. P., Thorn, S., Tolvanen, A., Teresa Zugliani Toniato, M., Totland, Ø., Twilley, R. R., Vaitkus, G., Valdivia, N., Vallejo, M. I., Valone, T. J., Van Colen, C., Vanaverbeke, J., Venturoli, F., Verheye, H. M., Vianna, M., Vieira, R. P., Vrška, T., Quang Vu, C., Van Vu, L., Waide, R. B., Waldock, C., Watts, D., Webb, S., Wesołowski, T., White, E. P., Widdicombe, C. E., Wilgers, D., Williams, R., Williams, S. B., Williamson, M., Willig, M. R., Willis, T. J., Wipf, S., Woods, K. D., Woehler, E. J., Zawada, K. & Zettler, M. L., 24 Jul 2018, In: Global Ecology and Biogeography. 27, 7, p. 760-786 27 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2017

Differential regulation of NMDA receptors by D-serine and glycine in mammalian spinal locomotor networks

Acton, D. & Miles, G. B., 1 May 2017, In: Journal of Neurophysiology. 117, 5, p. 1877-1893

Research output: Contribution to journal › Article › peer-review

Open Access

File

Generation of specific inhibitors of SUMO-1- and SUMO-2/3-mediated protein-protein interactions using Affimer (Adhiron) technology

Hughes, D. J., Tiede, C., Penswick, N., Ah-San Tang, A., Trinh, C. H., Mendal, U., Zajac, K. Z., Gaule, T., Howell, G., Edwards, T. A., Duan, J., Feyfant, E., McPhereson, M. J., Tomlinson, D. C. & Whitehouse, A., 14 Nov 2017, In: Science Signaling. 10, 505, 14 p., eaaj2005.

Research output: Contribution to journal › Article › peer-review

Open Access

File

Prevalence of multimodal species abundance distributions is linked to spatial and taxonomic breadth

Henriques Antão, L., Connolly, S. R., Magurran, A. E., Soares, A. & Dornelas, M., Feb 2017, In: Global Ecology and Biogeography. 26, 2, p. 203-215 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

The DCDC2 deletion is not a risk factor for dyslexia

Scerri, T. S., Macpherson, E., Martinelli, A., Wa, W. C., Monaco, A. P., Stein, J., Zheng, M., Ho, C.S.-H., McBride, C., Snowling, M., Hulme, C., Hayiou-Thomas, M. E., Waye, M. M. Y., Talcott, J. B. & Paracchini, S., 25 Jul 2017, In: Translational Psychiatry. 7, 7 p., e1182.

Research output: Contribution to journal › Article › peer-review

Open Access

File

2016

ARID3B: a novel regulator of the Kaposi’s sarcoma-associated herpesvirus lytic cycle

Wood, J., Boyne, J., Paulus, C., Jackson, B., Nevels, M. M., Whitehouse, A. & Hughes, D. J., Oct 2016, In: Journal of Virology. 90, 20, p. 9543-9555 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

File

The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity

Warne, B., Harkins, C. P., Harris, S. R., Vatsiou, A., Stanley-Wall, N., Parkhill, J., Peacock, S. J., Palmer, T. & Holden, M. T. G., 13 Mar 2016, In: BMC Genomics. 17, 1, p. 222

Research output: Contribution to journal › Article › peer-review

Open Access

File

ISSF 2

Research output

Search results

2024

2023

2022

2021

2020

2019

2018

2017

2016