Datasets
- 1 - 25 out of 31 results
Search results
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Anal lesions (AIN + cancers) collected in Scotland from 2009 to 2018 (thesis data)
Guerendiain Regalado, D. (Creator) & Holden, M. (Supervisor), University of St Andrews, 1 Nov 2023
DOI: 10.17630/1863d9da-1fe8-468c-a5fe-fcbe74bdaf32, https://doi.org/10.17630/sta/627
Dataset: Thesis dataset
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Gene exchange drives the ecological success of a multi-host bacterial pathogen (dataset)
Richardson, E. J. (Creator), Bacigalupe, R. (Creator), Harrison, E. M. (Creator), Weinert, L. A. (Creator), Lycett, S. (Creator), Vrieling, M. (Creator), Robb, K. (Creator), Hoskisson, P. A. (Creator), Holden, M. T. G. (Data Collector), Feil, E. J. (Creator), Paterson, G. K. (Creator), Tong, S. Y. C. (Creator), Shittu, A. (Creator), van Wamel, W. (Creator), Aanensen, D. M. (Creator), Parkhill, J. (Creator), Peacock, S. J. (Creator), Corander, J. (Creator), Holmes, M. (Creator) & Fitzgerald, J. R. (Creator), EMBL-EBI, 4 Aug 2018
https://www.ebi.ac.uk/ena/data/view/PRJEB22062
Dataset
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Emergence of a new highly successful acapsular Group A Streptococcus clade of the genotype emm89 in the United Kingdom (dataset)
Turner, C. E. (Creator), Abbott, J. (Creator), Lamagni, T. (Creator), Holden, M. T. G. (Creator), David, S. (Creator), Jones, M. D. (Creator), Game, L. (Creator), Efstratiou, A. (Creator) & Sriskandan, S. (Creator), European Nucleotide Archive (ENA), 13 May 2014
https://www.ebi.ac.uk/ena/data/view/PRJEB6299 and 3 more links, https://www.ebi.ac.uk/ena/data/view/PRJEB1935, https://www.ebi.ac.uk/ena/data/view/HG316453, https://www.ebi.ac.uk/ena (show fewer)
Dataset
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Proposal of serovars 17 and 18 of Actinobacillus pleuropneumoniae based on serological and genotypic analysis (dataset)
Bossé, J. T. (Creator), Li, Y. (Creator), Sárközi, R. (Creator), Fodor, L. (Creator), Lacouture, S. (Creator), Gottschalk, M. (Creator), Casas Amoribieta, M. (Creator), Angen, Ø. (Creator), Nedbalcova, K. (Creator), Holden, M. T. G. (Creator), Maskell, D. J. (Creator), Tucker, A. W. (Creator), Wren, B. W. (Creator), Rycroft, A. N. (Creator) & Langford, P. R. (Creator), National Center for Biotechnology Information, 9 Apr 2018
https://www.ncbi.nlm.nih.gov/nucleotide/
Dataset
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Genomic dissection of an Icelandic epidemic of respiratory disease in horses and associated zoonotic cases (dataset)
Björnsdóttir, S. (Creator), Harris, S. R. (Creator), Svansson, V. (Creator), Gunnarsson, E. (Creator), Sigurðardóttir, Ó. G. (Creator), Gammeljord, K. (Creator), Steward, K. F. (Creator), Newton, J. R. (Creator), Robinson, C. (Creator), Charbonneau, A. R. L. (Creator), Parkhill, J. (Creator), Holden, M. T. G. (Creator) & Waller, A. S. (Creator), European Nucleotide Archive (ENA), 2017
http://www.ebi.ac.uk/ena/data/view/PRJEB2664
Dataset
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Data underpinning - Whole-genome sequencing of a quarter-century melioidosis outbreak in temperate Australia uncovers a region of low-prevalence endemicity
Chapple, S. N. J. (Creator), Sarovich, D. S. (Creator), Holden, M. T. G. (Creator), Peacock, S. J. (Creator), Buller, N. (Creator), Golledge, C. (Creator), Currie, B. J. (Creator), Mayo, M. (Creator) & Price, E. P. (Creator), National Center for Biotechnology Information, 2016
http://www.ebi.ac.uk/ena/data/view/ERS205900 and 11 more links, http://www.ebi.ac.uk/ena/data/view/ERS205902, http://www.ebi.ac.uk/ena/data/view/ERS205903, http://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2134233, http://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2134234, http://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2134235, http://trace.ncbi.nlm.nih.gov/Traces/sra/? run=SRR 2 1 3 4 2 3 7, http://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2134238, http://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2134239, http://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2134240, http://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2134242, http://www.ncbi.nlm.nih.gov/nuccore/LGKL00000000 (show fewer)
Dataset
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The micro-evolution and epidemiology of Staphylococcus aureus colonization during atopic eczema disease flare (dataset)
Harkins, C. (Creator), Pettigrew, K. A. (Creator), Oravcova, K. (Creator), Gardner, J. (Creator), Hearn, R. M. R. (Creator), Rice, D. (Creator), Mather (Alison E Mather), A. E. (Creator), Parkhill, J. (Creator), Brown, S. J. (Creator), Proby, C. M. (Creator) & Holden, M. T. G. (Creator), European Nucleotide Archive (ENA), 2017
http://www.ebi.ac.uk/ena/data/view/PRJEB20148
Dataset
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Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system (dataset)
Hsu, L.-Y. (Creator), Harris, S. R. (Creator), Chlebowicz, M. A. (Creator), Lindsay, J. A. (Creator), Koh, T.-H. (Creator), Krishnan, P. (Creator), Tan, T.-Y. (Creator), Hon, P.-Y. (Creator), Grubb, W. B. (Creator), Bentley, S. D. (Creator), Parkhill, J. (Creator), Peacock, S. J. (Creator) & Holden, M. T. G. (Creator), European Nucleotide Archive (ENA), 14 Feb 2011
https://www.ebi.ac.uk/ena/data/view/PRJEB2295
Dataset
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Whole-genome sequencing to investigate a non-clonal melioidosis cluster on a remote Australian island (dataset)
Sarovich, D. S. (Creator), Chapple, S. N. J. (Creator), Price , E. P. (Creator), Mayo, M. (Creator), Holden, M. T. G. (Creator), Peacock, S. J. (Creator) & Currie, B. J. (Creator), European Nucleotide Archive (ENA), 31 Aug 2017
http://www.ebi.ac.uk/ena/data/view/ERR311046 and 11 more links, https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3525374;, https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3525385;, https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3525386, http://www.ebi.ac.uk/ena/data/view/ERR311049, https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3525387;, https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3525399;, https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3525400;, https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR3525401;, http://www.ebi.ac.uk/ena/data/view/ERR311053, http://www.ebi.ac.uk/ena/data/view/ERR311054, https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5260553 (show fewer)
Dataset
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Genomic characterisation of early UK MRSA isolates
Harkins, C. (Creator), Pichon, B. (Creator), Doumith, M. (Creator), Parkhill, J. (Creator), Westh, H. (Creator), Tomasz, A. (Creator), de Lencastre, H. (Creator), Bentley, S. D. (Creator), Kearns, A. M. (Creator) & Holden, M. T. G. (Creator), European Nucleotide Archive (ENA), 2017
http://www.ebi.ac.uk/ena/data/view/PRJEB2812
Dataset
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Microreact: visualizing and sharing data for genomic epidemiology and phylogeography (dataset)
Argimón, S. (Creator), Abudahab, K. (Creator), Goater, R. J. (Creator), Fedosejev, A. (Creator), Bhai, J. (Creator), Glasner, C. (Creator), Feil, E. J. (Creator), Holden, M. T. G. (Creator), Yeats, C. A. (Creator), Grundmann, H. (Creator), Spratt, B. G. (Creator) & Aanensen, D. M. (Creator), Imperial College London, 30 Nov 2016
Dataset
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Global scale dissemination of ST93: a divergent Staphylococcus aureus epidemic lineage that has recently emerged from remote Northern Australia (sequence dataset)
van Hal, S. J. (Creator), Steinig, E. J. (Creator), Andersson, P. (Creator), Holden, M. T. G. (Creator), Harris, S. R. (Creator), Nimmo, G. R. (Creator), Williamson, D. A. (Creator), Heffernan, H. (Creator), Ritchie, S. R. (Creator), Kearns, A. M. (Creator), Ellington, M. J. (Creator), Dickson, E. (Creator), de Lencastre, H. (Creator), Coombs, G. W. (Creator), Bentley, S. D. (Creator), Parkhill, J. (Creator), Holt, D. C. (Creator), Giffard, P. M. (Creator) & Tong, S. Y. C. (Creator), European Nucleotide Archive (ENA), 2018
https://www.ebi.ac.uk/ena and one more link, https://www.frontiersin.org/articles/10.3389/fmicb.2018.01453/full#supplementary-material (show fewer)
Dataset
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Whole-genome sequencing confirms that Burkholderia pseudomallei multilocus sequence types common to both Cambodia and Australia are due to homoplasy (dataset)
De Smet, B. (Creator), Sarovich, D. S. (Creator), Price, E. P. (Creator), Mayo, M. (Creator), Theobald, V. (Creator), Kham, C. (Creator), Heng, S. (Creator), Phe, T. (Creator), Holden, M. T. G. (Creator), Parkhill, J. (Creator), Peacock, S. J. (Creator), Spratt, B. G. (Creator), Jacobs, J. (Creator), Vandamme, P. (Creator) & Currie, B. J. (Creator), National Center for Biotechnology Information, 25 Jun 2014
https://www.ncbi.nlm.nih.gov/sra/ERR539773 and 5 more links, https://www.ncbi.nlm.nih.gov/sra/ERR539807, https://www.ncbi.nlm.nih.gov/sra/ERR539841, https://www.ncbi.nlm.nih.gov/sra/ERR298339, https://www.ncbi.nlm.nih.gov/sra/ERR298360, https://www.ncbi.nlm.nih.gov/sra/ERR298343 (show fewer)
Dataset
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Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (dataset - Genome assemblies)
Weinert, L. A. (Creator), Chaudhuri, R. R. (Creator), Wang, J. (Creator), Peters, S. E. (Creator), Jukka Corander, J. C. (Creator), Jombart, T. (Creator), Baig, A. (Creator), Howell, K. J. (Creator), Vehkala, M. (Creator), Välimäki, N. (Creator), Harris, D. (Creator), Bich Chieu, T. T. (Creator), Campbell, J. (Creator), Schultsz, C. (Creator), Parkhill, J. (Creator), Bentley, S. D. (Creator), Langford, P. R. (Creator), Rycroft, A. N. (Creator), Wren, B. W. (Creator), Farrar, J. (Creator), Baker, S. (Creator), Hoa, N. T. (Creator), Holden, M. T. G. (Creator), Tucker, A. W. (Creator) & Maskell, D. J. (Creator), European Nucleotide Archive (ENA), 13 Feb 2015
http://www.ebi.ac.uk/ena/data/view/ERS655506 and 2 more links, http://www.ebi.ac.uk/ena/data/view/ERS655880, http://www.ebi.ac.uk/ena/data/view/PRJEB8392 (show fewer)
Dataset
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Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (dataset - High-Throughput sequencing)
Weinert, L. A. (Creator), Chaudhuri, R. R. (Creator), Wang, J. (Creator), Peters, S. E. (Creator), Corander, J. (Creator), Jombart, T. (Creator), Baig, A. (Creator), Howell, K. J. (Creator), Vehkala, M. (Creator), Välimäki, N. (Creator), Harris, D. (Creator), Bich Chieu, T. T. (Creator), Vinh Chau, N. V. (Creator), Campbell, J. (Creator), Schultsz, C. (Creator), Parkhill, J. (Creator), Bentley, S. D. (Creator), Langford, P. R. (Creator), Rycroft, A. N. (Creator), Wren, B. W. (Creator), Farrar, J. (Creator), Baker, S. (Creator), Hoa, N. T. (Creator), Holden, M. T. G. (Creator), Tucker, A. W. (Creator) & Maskell, D. J. (Creator), National Center for Biotechnology Information, 20 Dec 2012
http://www.ncbi.nlm.nih.gov/sra?term=ERS018463 and 25 more links, http://www.ncbi.nlm.nih.gov/sra?term=ERS132367, http://www.ncbi.nlm.nih.gov/sra?term=ERS132370, http://www.ncbi.nlm.nih.gov/sra?term=ERS132376, http://www.ncbi.nlm.nih.gov/sra?term=ERS132352, http://www.ncbi.nlm.nih.gov/sra?term=ERS132380, http://www.ncbi.nlm.nih.gov/sra?term=ERS132382, http://www.ncbi.nlm.nih.gov/sra?term=ERS132404, http://www.ncbi.nlm.nih.gov/sra?term=ERS132406, http://www.ncbi.nlm.nih.gov/sra?term=ERS132409, http://www.ncbi.nlm.nih.gov/sra?term=ERS132454, http://www.ncbi.nlm.nih.gov/sra?term=ERS132456, http://www.ncbi.nlm.nih.gov/sra?term=ERS132469, http://www.ncbi.nlm.nih.gov/sra?term=ERS132471, http://www.ncbi.nlm.nih.gov/sra?term=ERS132500, http://www.ncbi.nlm.nih.gov/sra?term=ERS132502, http://www.ncbi.nlm.nih.gov/sra?term=ERS132505, http://www.ncbi.nlm.nih.gov/sra?term=ERS132536, http://www.ncbi.nlm.nih.gov/sra?term=ERS132538, http://www.ncbi.nlm.nih.gov/sra?term=ERS132551, http://www.ncbi.nlm.nih.gov/sra?term=ERS156197, http://www.ncbi.nlm.nih.gov/sra?term=ERS156218, http://www.ncbi.nlm.nih.gov/sra?term=ERS156220, http://www.ncbi.nlm.nih.gov/sra?term=ERS156290, http://www.ncbi.nlm.nih.gov/sra?term=ERS156292, http://www.ncbi.nlm.nih.gov/sra?term=ERS156388 (show fewer)
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Haem-iron plays a key role in the regulation of the Ess/type VII secretion system of Staphylococcus aureus RN6390 (dataset)
Casabona, M. G. (Creator), Kneuper, H. (Creator), Alferes De Lima, D. (Creator), Harkins, C. (Creator), Zoltner, M. (Creator), Hjerde, E. (Creator), Holden, M. T. G. (Creator) & Palmer, T. (Creator), European Nucleotide Archive (ENA), 26 May 2015
https://www.ebi.ac.uk/ena/data/view/PRJEB8221
Dataset
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Unravelling the complex interplay between antibiotic consumption and adaptive changes in methicillin-resistant Staphylococcus aureus (dataset)
Holden, M. (Creator), European Nucleotide Archive (ENA), 2024
https://www.ebi.ac.uk/ena/browser/view/PRJEB2561
Dataset
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Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles (dataset - Sequencing data)
Nandi, T. (Creator), Holden, M. T. G. (Creator), Didelot, X. (Creator), Mehershahi, K. (Creator), Boddey, J. A. (Creator), Beacham, I. (Creator), Peak, I. (Creator), Harting, J. (Creator), Baybayan, P. (Creator), Guo, Y. (Creator), Wang, S. (Creator), How, L. C. (Creator), Sim, B. (Creator), Essex-Lopresti, A. (Creator), Sarkar-Tyson, M. (Creator), Nelson, M. (Creator), Smither, S. (Creator), Ong, C. (Creator), Aw, L. T. (Creator), Hoon, C. H. (Creator), Michell, S. (Creator), Studholme, D. J. (Creator), Titball, R. (Creator), Chen, S. L. (Creator), Parkhill, J. (Creator) & Tan, P. (Creator), European Nucleotide Archive (ENA), 19 Jan 2011
https://www.ebi.ac.uk/ena/data/search?query=ERP000251
Dataset
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Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission (dataset)
Paterson, G. K. (Creator), Harrison, E. M. (Creator), Murray, G. G. R. (Creator), Welch, J. J. (Creator), Holden, M. T. G. (Creator), Morgan, F. J. E. (Creator), Ba, X. (Creator), Koop, G. (Creator), Harris, S. R. (Creator), Maskell, D. J. (Creator), Peacock, S. J. (Creator), Herrtage, M. E. (Creator), Parkhill, J. (Creator) & Holmes, M. A. (Creator), European Nucleotide Archive (ENA), 23 Sept 2013
https://www.ebi.ac.uk/ena/data/view/PRJEB4141
Dataset
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Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection (dataset)
Harris, S. R. (Creator), Robinson, C. (Creator), Steward, K. F. (Creator), Webb, K. S. (Creator), Paillot, R. (Creator), Parkhill, J. (Creator), Holden, M. T. G. (Creator) & Waller, A. S. (Creator), European Nucleotide Archive (ENA), 19 Sept 2011
https://www.ebi.ac.uk/ena/data/view/PRJEB2635
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Comparative sequence analysis of the capsular polysaccharide loci of Actinobacillus pleuropneumoniae serovars 1-18, and development of two multiplex PCRs for comprehensive capsule typing (dataset)
Bossé, J. T. (Creator), Li, Y. (Creator), Fernandez Crespo, R. (Creator), Lacouture, S. (Creator), Gottschalk, M. (Creator), Sárközi, R. (Creator), Fodor, L. (Creator), Casas Amoribieta, M. (Creator), Angen, Ø. (Creator), Nedbalcova, K. (Creator), Holden, M. T. G. (Creator), Maskell, D. J. (Creator), Tucker, A. W. (Creator), Wren, B. W. (Creator), Rycroft, A. N. (Creator) & Langford, P. R. (Creator), National Center for Biotechnology Information, 2018
https://www.ncbi.nlm.nih.gov/nuccore/MG868948 and 4 more links, https://www.ncbi.nlm.nih.gov/nuccore/MG868949, https://www.ncbi.nlm.nih.gov/nuccore/MG868950, https://www.ncbi.nlm.nih.gov/nuccore/MG868951, https://www.ncbi.nlm.nih.gov/nuccore/MG868952 (show fewer)
Dataset
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Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles (dataset - Methylation data)
Nandi, T. (Creator), Holden, M. T. G. (Creator), Didelot, X. (Creator), Mehershahi, K. (Creator), Boddey, J. A. (Creator), Beacham, I. (Creator), Peak, I. (Creator), Harting, J. (Creator), Baybayan, P. (Creator), Guo, Y. (Creator), Wang, S. (Creator), How, L. C. (Creator), Sim, B. (Creator), Essex-Lopresti, A. (Creator), Sarkar-Tyson, M. (Creator), Nelson, M. (Creator), Smither, S. (Creator), Ong, C. (Creator), Aw, L. T. (Creator), Hoon, C. H. (Creator), Michell, S. (Creator), Studholme, D. J. (Creator), Titball, R. (Creator), Chen, S. L. (Creator), Parkhill, J. (Creator) & Tan, P. (Creator), Gene Expression Omnibus (GEO), 15 Sept 2014
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=
Dataset