Andy Lynch

Mutation calls for 'A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy'

Noorani, A. (Creator), Bornschein, J. (Creator), Lynch, A. (Creator), Secrier, M. (Creator), Achilleos, A. (Creator), Eldridge, M. (Creator), Bower, L. (Creator), Weaver, J. M. J. (Creator), Crawte, J. (Creator), Ong, C.-A. (Creator), Shannon, N. (Creator), MacRae, S. (Creator), Grehan, N. (Creator), Nutzinger, B. (Creator), O'Donovan, M. (Creator), Hardwick, R. (Creator), Tavaré, S. (Creator) & Fitzgerald, R. C. (Creator), International Cancer Genome Consortium (ICGC), 2017

https://dcc.icgc.org/projects/ESAD-UK

Dataset

Crambled: A Shiny application to enable intuitive resolution of conflicting cellularity estimates (dataset)

Lynch, A. (Creator), Zenodo, 24 Nov 2015

DOI: 10.5281/zenodo.34147, https://github.com/dralynch/crambled

Dataset

Genomic evolution of breast cancer metastasis and relapse - Yates et al.

Campbell, P. (Creator) & Lynch, A. (Creator), Mendeley Data, 28 Jun 2017

DOI: 10.17632/g7kpzkhz8c.1

Dataset

Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells (dataset)

Lynch, A. (Creator), European Genome-phenome Archive (EGA), 2015

https://www.ebi.ac.uk/ega/studies/EGAS00001001234

Dataset

Tool to estimate glomerular filtration

Janowitz, T. (Creator), Williams, E. H. (Creator), Marshall, A. (Creator), Ainsworth, N. (Creator), Thomas, P. B. (Creator), Sammut, S. J. (Creator), Shepherd, S. (Creator), White, J. (Creator), Mark, P. B. (Creator), Lynch, A. (Creator), Jodrell, D. I. (Creator), Tavaré, S. (Creator) & Earl, H. (Creator), University of Cambridge, 2017

https://sites.google.com/site/janowitzwilliamsgfr/

Dataset

Additional files 1, 3-8 of The architecture of clonal expansions in morphologically normal tissue from cancerous and non-cancerous prostates

Buhigas, C. (Creator), Warren, A. Y. (Creator), Leung, W.-K. (Creator), Whitaker, H. C. (Creator), Luxton, H. J. (Creator), Hawkins, S. (Creator), Kay, J. (Creator), Butler, A. (Creator), Xu, Y. (Creator), Woodcock, D. J. (Creator), Merson, S. (Creator), Frame, F. M. (Creator), Sahli, A. (Creator), Abascal, F. (Creator), Martincorena, I. (Creator), Bova, G. S. (Creator), Foster, C. S. (Creator), Campbell, P. (Creator), Maitland, N. J. (Creator), Neal, D. E. (Creator), Massie, C. E. (Creator), Lynch, A. G. (Creator), Eeles, R. A. (Creator), Cooper, C. S. (Creator), Wedge, D. C. (Creator) & Brewer, D. S. (Creator), Figshare, 2022

DOI: 10.6084/m9.figshare.21185567.v1, https://doi.org/10.6084/m9.figshare.21185573.v1 and 5 more links, https://doi.org/10.6084/m9.figshare.21185576.v1, https://doi.org/10.6084/m9.figshare.21185579.v1, https://doi.org/10.6084/m9.figshare.21185588.v1, https://doi.org/10.6084/m9.figshare.21185591.v1, https://doi.org/10.6084/m9.figshare.21185594.v1 (show fewer)

Dataset

Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53 (dataset)

Lynch, A. (Creator), Gene Expression Omnibus (GEO), 2015

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE53491 and one more link, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE53379 (show fewer)

Dataset

Whole-genome sequencing of nine esophageal adenocarcinoma cell lines (dataset)

Lynch, A. (Creator), European Nucleotide Archive (ENA), 2016

http://www.ebi.ac.uk/ena/data/view/PRJEB14018

Dataset

Genomic Evolution of Breast Cancer Metastasis and Relapse (dataset)

Lynch, A. (Creator), European Genome-phenome Archive (EGA), 2017

https://www.ebi.ac.uk/ega/datasets/EGAD00001002698 and 2 more links, https://www.ebi.ac.uk/ega/datasets/EGAD00001002697, https://www.ebi.ac.uk/ega/datasets/EGAD00001002696 (show fewer)

Dataset

Genomic Evolution of Breast Cancer Metastasis and Relapse (dataset - genome sequencing mutation pipeline)

Lynch, A. (Creator), Dockstore, 2017

https://dockstore.org/containers/quay.io/pancancer/pcawg-sanger-cgp-workflow

Dataset

Whole-genome sequencing data for 'A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy'

Noorani, A. (Creator), Bornschein, J. (Creator), Lynch, A. (Creator), Secrier, M. (Creator), Achilleos, A. (Creator), Eldridge, M. (Creator), Bower, L. (Creator), Weaver, J. M. J. (Creator), Crawte, J. (Creator), Ong, C.-A. (Creator), Shannon, N. (Creator), MacRae, S. (Creator), Grehan, N. (Creator), Nutzinger, B. (Creator), O'Donovan, M. (Creator), Hardwick, R. (Creator), Tavaré, S. (Creator) & Fitzgerald, R. C. (Creator), European Genome-phenome Archive (EGA), 2017

https://www.ebi.ac.uk/ega/datasets/EGAD00001002241

Dataset

Appraising the relevance of DNA copy number loss and gain in prostate cancer using whole genome DNA sequence data (dataset)

Lynch, A. (Creator), Camacho, N. (Creator), Van Loo, P. (Creator), Edwards, S. (Creator), Kay (Jonathan D Kay), J. D. (Creator), Matthews, L. (Creator), Haase, K. (Creator), Clark, J. (Creator), Dennis, N. (Creator), Thomas, S. (Creator), Kremeyer, B. (Creator), Zamora, J. (Creator), Butler, A. P. (Creator), Gundem, G. (Creator), Merson, S. (Creator), Luxton, H. (Creator), Hawkins, S. (Creator), Ghori, M. (Creator), Marsden, L. (Creator), Lambert, A. (Creator), Karaszi, K. (Creator), Pelvender, G. (Creator), Massie, C. E. (Creator), Kote-Jarai (Zsofia Kote-Jarai), Z. (Creator), Raine (Keiran Raine), K. (Creator), Jones, D. (Creator), Howat, W. J. (Creator), Hazell, S. (Creator), Livni, N. (Creator), Fisher, C. (Creator), Ogden, C. (Creator), Kumar, P. (Creator), Thompson, A. (Creator), Nicol, D. (Creator), Mayer, E. (Creator), Dudderidge, T. (Creator), Yu, Y. (Creator), Zhang, H. (Creator), Shah, N. C. (Creator), Gnanapragasam, V. J. (Creator), The CRUK-ICGC Prostate Group (Creator), Isaacs, W. (Creator), Visakorpi, T. (Creator), Hamdy, F. (Creator), Berney, D. (Creator), Verrill, C. (Creator), Warren, A. Y. (Creator), Wedge, D. C. (Creator), Foster, C. S. (Creator), Lu (Yong-Jie Lu), Y. J. (Creator), Bova, G. S. (Creator), Whitaker, H. C. (Creator), McDermott, U. (Creator), Neal, D. E. (Creator), Eeles, R. (Creator), Cooper, C. S. (Creator) & Brewer, D. S. (Creator), European Genome-phenome Archive (EGA), 2017

https://www.ebi.ac.uk/ega/studies/EGAS00001000262

Dataset

Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets (dataset)

Wedge, D. C. (Creator), Gundem, G. (Creator), Mitchell, T. (Creator), Woodstock, D. J. (Creator), Martincorena, I. (Creator), Ghori, M. (Creator), Zamora, J. (Creator), Butler, A. (Creator), Whitaker, H. (Creator), Kote-Jarai, Z. (Creator), Alexandrov, L. B. (Creator), Van Loo, P. (Creator), Massie, C. E. (Creator), Dentro, S. (Creator), Warren, A. Y. (Creator), Verrill, C. (Creator), Berney, D. M. (Creator), Dennis, N. (Creator), Merson, S. (Creator), Hawkins, S. (Creator), Howat, W. (Creator), Lu, Y.-J. (Creator), Lambert, A. (Creator), Kay, J. (Creator), Kremeyer, B. (Creator), Karaszi, K. (Creator), Luxton, H. (Creator), Camacho, N. (Creator), Marsden, L. (Creator), Edwards, S. (Creator), Matthews, L. (Creator), Bo, V. (Creator), Leongamornlert, D. (Creator), McLaren, S. (Creator), Ng, A. (Creator), Yu, Y. (Creator), Zhang, H. (Creator), Dadaev, T. (Creator), Thomas, S. (Creator), Easton, D. F. (Creator), Ahmed, M. (Creator), Bancroft, E. (Creator), Fisher, C. (Creator), Livni, N. (Creator), Nicol, D. (Creator), Tavaré, S. (Creator), Gill, P. (Creator), Greenman, C. (Creator), Khoo, V. (Creator), Van As, N. (Creator), Kumar, P. (Creator), Ogden, C. (Creator), Cahill, D. (Creator), Thompson, A. (Creator), Meyer, E. (Creator), Rowe, E. (Creator), Dudderidge, T. (Creator), Gnanapragasam, V. (Creator), Shah, N. C. (Creator), Raine, K. (Creator), Jones, D. (Creator), Menzies, A. (Creator), Stebbings, L. (Creator), Teague, J. (Creator), Hazell, S. (Creator), Corbishley, C. (Creator), de Bono, J. (Creator), Attard, G. (Creator), Isaacs, W. (Creator), Visakorpi, T. (Creator), Fraser, M. (Creator), Boutros, P. C. (Creator), Bristow, R. G. (Creator), Workman, P. (Creator), Sander, C. (Creator), Hamdy, F. C. (Creator), Futreal, A. (Creator), McDermott, U. (Creator), Al-Lazikani, B. (Creator), Lynch, A. G. (Data Collector), Bova, G. S. (Creator), Foster, C. S. (Creator), Brewer, D. S. (Creator), Neal, D. E. (Creator), Cooper, C. S. (Creator) & Eeles, R. A. (Creator), European Genome-phenome Archive (EGA), 16 Apr 2018

https://www.ebi.ac.uk/ega/studies/EGAS00001000262

Dataset

Cholinekinase alpha as an androgen receptor chaperone and prostate cancer therapeutic target (dataset)

Lynch, A. (Creator), Gene Expression Omnibus (GEO), 2015

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi

Dataset

Mutational signatures of ionizing radiation in second malignancies (dataset)

Lynch, A. (Creator), European Genome-phenome Archive (EGA), 2016

https://www.ebi.ac.uk/ega/studies/EGAS00001000138 and 2 more links, https://www.ebi.ac.uk/ega/studies/EGAS00001000147, https://www.ebi.ac.uk/ega/search/site/EGAS00001000195 (show fewer)

Dataset

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing (dataset)

Alioto, T. S. (Creator), Buchhalter, I. (Creator), Derdak, S. (Creator), Hutter, B. (Creator), Eldridge, M. D. (Creator), Hovig, E. (Creator), Heisler, L. E. (Creator), Beck, T. A. (Creator), Simpson, J. T. (Creator), Tonon, L. (Creator), Sertier, A.-S. (Creator), Patch, A.-M. (Creator), Jaeger, N. (Creator), Ginsbach, P. (Creator), Drews, R. (Creator), Paramasivam, N. (Creator), Kabbe, R. (Creator), Chotewutmontri, S. (Creator), Diessl, N. (Creator), Previti, C. (Creator), Schmidt, S. (Creator), Brors, B. (Creator), Feuerbach, L. (Creator), Heinold, M. (Creator), Groebner, S. (Creator), Korshunov, A. (Creator), Tarpey, P. S. (Creator), Butler, A. P. (Creator), Hinton, J. (Creator), Jones, D. (Creator), Menzies, A. (Creator), Raine, K. (Creator), Shepherd, R. (Creator), Stebbings, L. (Creator), Teague, J. W. (Creator), Ribeca, P. (Creator), Castro Giner, F. (Creator), Beltran, S. (Creator), Raineri, E. (Creator), Dabad, M. (Creator), Heath, S. C. (Creator), Gut, M. (Creator), Denroche, R. E. (Creator), Harding, N. J. (Creator), Yamaguchi, T. N. (Creator), Fujimoto, A. (Creator), Nakagawa, H. (Creator), Quesada, C. (Creator), Valdes-Mas, R. (Creator), Nakken, S. (Creator), Vodak, D. (Creator), Bower, L. (Creator), Lynch, A. (Creator), Anderson, C. L. (Creator), Waddell, N. (Creator), Pearson, J. V. (Creator), Grimmond, S. M. (Creator), Peto, M. (Creator), Spellman, P. (Creator), He, M. (Creator), Kandoth, C. (Creator), Lee, S. (Creator), Zhang, J. (Creator), Letourneau, L. (Creator), Ma, S. (Creator), Seth, S. (Creator), Torrents, D. (Creator), Xi, L. (Creator), Wheeler, D. A. (Creator), Lopez-Otin, C. (Creator), Campo, E. (Creator), Campbell, P. J. (Creator), Boutros, P. C. (Creator), Puente, X. S. (Creator), Gerhard, D. S. (Creator), Pfister, S. M. (Creator), McPherson, J. D. (Creator), Hudson, T. J. (Creator), Schlesner, M. (Creator), Lichter, P. (Creator), Eils, R. (Creator), Jones, D. T. W. (Creator) & Gut, I. G. (Creator), European Genome-phenome Archive (EGA), 2015

https://www.ebi.ac.uk/ega/studies/EGAS00001001539

Dataset