St Andrews Bioinformatics Unit

Search results

• Rocky Shore Samples: Bayesian Networks as a novel tool to enhance interpretability and predictive power of ecological models.

  Hui, E. (Creator), Stafford, R. (Owner), Matthews, I. M. (Owner) & Smith, V. A. (Owner), University of St Andrews, 10 May 2022

  DOI: 10.17630/f2b69f88-efb7-43a1-96e9-70012256a752

  Dataset

  File

• Shedding Light on DNA-Protein Interactions involved in the Nucleotide Excision Repair pathway - Chapter III - SSBs (thesis data)

  Fritzen, R. (Creator), Penedo, C. (Supervisor) & White, M. (Supervisor), University of St Andrews, 4 Feb 2075

  DOI: 10.17630/963932fc-cc3e-4b69-b92d-58108e138657

  Dataset: Thesis dataset

• De novo genome assembly of Plasmodium knowlesi from contemporary clinical isolates - a novel scalable resource to take forward malaria research (thesis data)

  Oresegun, D. R. (Creator), Cox-Singh, J. (Supervisor) & Reynolds, P. A. (Supervisor), University of St Andrews, 2 Nov 2023

  DOI: 10.17630/541e495e-231a-4c43-bd02-904bc3fd6f79

  Dataset: Thesis dataset

  File

• Anal lesions (AIN + cancers) collected in Scotland from 2009 to 2018 (thesis data)

  Guerendiain Regalado, D. (Creator) & Holden, M. (Supervisor), University of St Andrews, 1 Nov 2023

  DOI: 10.17630/1863d9da-1fe8-468c-a5fe-fcbe74bdaf32, https://doi.org/10.17630/sta/627

  Dataset: Thesis dataset

  File

• 2022 BEDI Workload Creep survey data

  Bailey, N. W. (Creator), University of St Andrews, 11 Jan 2024

  DOI: 10.17630/0c80dd00-8752-49b9-93cc-81b1dd7d6787

  Dataset

  File

• Investigating the role of the chromatin remodeller XNP-1 in C. elegans (Thesis Data)

  Olver, J. (Creator) & Ferreira, H. (Supervisor), University of St Andrews, 23 Jan 2026

  DOI: 10.17630/3cdce624-5259-4253-819b-d9873cab2896, https://doi.org/10.17630/sta/707

  Dataset: Thesis dataset

• Towards complete and error-free genome assemblies of all vertebrate species (code)

  Vernes, S. (Creator), GitHub, 2021

  https://github.com/VGP/vgp-assembly/tree/master/pipeline

  Dataset: Software

• Gill transcriptomic responses to toxin-producing alga Prymnesium parvum in rainbow trout (datset)

  Ferrier, D. E. K. (Creator), ArrayExpress – functional genomics data, 2021

  https://www.ebi.ac.uk/arrayexpress/arrays/A-MEXP-2315/ and one more link, https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-10541/ (show fewer)

  Dataset

• Supporting data for "Genome of the ramshorn snail Biomphalaria straminea - an obligate intermediate host of schistosomiasis"

  Wenyan, N. (Contributor), Yifei, Y. (Contributor), Madeleine, A.-R. E. (Contributor), Yichun, X. (Contributor), Wai, S. L. (Contributor), Yiqian, L. (Contributor), Cheuk, W. F. (Contributor), Toby, B. (Contributor), Sean, S. L. T. (Contributor), Sheung, L. Y. (Contributor), Jasmine, H. (Contributor), Thomas, S. (Contributor), Shan-Shan, C. (Contributor), Zhen-Peng, K. (Contributor), Sun, X. (Contributor), Zhongdao, W. (Contributor), Alex, H. (Contributor), David, K. F. E. (Contributor) & Jerome, L. H. H. (Contributor), GigaDB, 21 Jan 2022

  DOI: 10.5524/100985

  Dataset

• The genome sequence of Rhynchonycteris naso, Peters, 1867 (Chiroptera, Emballonuridae, Rhynchonycteris) (dataset)

  Alvarez van Tussenbroek, I. (Creator), Mai, M. (Creator) & Vernes, S. (Creator), NCBI GenBank, 2024

  https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_031021685.1/ and 5 more links, https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_037038555.1/, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA945050/, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1076651/, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1076652/, https://www.ncbi.nlm.nih.gov/biosample/SAMN39947078/ (show fewer)

  Dataset

• The genome sequence of the particolored bat, Vespertilio murinus Linnaeus, 1758 (dataset)

  Mai, M. (Creator) & Vernes, S. (Creator), NCBI GenBank, 2024

  https://www.ncbi.nlm.nih.gov/bioproject/PRJEB71534/

  Dataset

• Molossus nigricans isolate:mMolNig1 genome sequencing and assembly (northern black mastiff bat) (dataset)

  Mai, M. (Creator) & Vernes, S. (Creator), National Center for Biotechnology Information, 16 Dec 2022

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA904257/

  Dataset

• The genome sequence of Molossus alvarezi González-Ruiz, Ramírez-Pulido and Arroyo-Cabrales, 2011 (Chiroptera, Molossidae) (dataset)

  Mai, M. (Creator) & Vernes, S. (Creator), NCBI GenBank, 2024

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA944206 and one more link, https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_037157525.1/ (show fewer)

  Dataset

• Molossus nigricans genome sequencing and assembly (dataset)

  Mai, M. (Creator) & Vernes, S. (Creator), European Nucleotide Archive (ENA), 16 Dec 2022

  https://www.ebi.ac.uk/ena/browser/view/GCA_026936385.1

  Dataset

• The genome sequence of the whiskered bat, Myotis mystacinus (Kuhl, 1817) (dataset)

  Vernes, S. (Creator) & Mai, M. (Creator), NCBI GenBank, 2024

  https://www.ncbi.nlm.nih.gov/bioproject/PRJEB73910/

  Dataset

• The genome sequence of the Brown Long-eared bat, Plecotus auritus (Linnaeus 1758) (dataset)

  Vernes, S. (Creator) & Mai, M. (Creator), NCBI GenBank, 2024

  https://www.ncbi.nlm.nih.gov/bioproject/PRJEB65183/

  Dataset

• The genome sequence of Daubenton?s bat, Myotis daubentonii (Kuhl, 1817) (dataset)

  Vernes, S. (Creator) & Mai, M. (Creator), NCBI GenBank, 2024

  https://www.ncbi.nlm.nih.gov/bioproject/PRJEB61137/

  Dataset

• Additional files 1, 3-8 of The architecture of clonal expansions in morphologically normal tissue from cancerous and non-cancerous prostates

  Buhigas, C. (Creator), Warren, A. Y. (Creator), Leung, W.-K. (Creator), Whitaker, H. C. (Creator), Luxton, H. J. (Creator), Hawkins, S. (Creator), Kay, J. (Creator), Butler, A. (Creator), Xu, Y. (Creator), Woodcock, D. J. (Creator), Merson, S. (Creator), Frame, F. M. (Creator), Sahli, A. (Creator), Abascal, F. (Creator), Martincorena, I. (Creator), Bova, G. S. (Creator), Foster, C. S. (Creator), Campbell, P. (Creator), Maitland, N. J. (Creator), Neal, D. E. (Creator), Massie, C. E. (Creator), Lynch, A. G. (Creator), Eeles, R. A. (Creator), Cooper, C. S. (Creator), Wedge, D. C. (Creator) & Brewer, D. S. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.21185567.v1, https://doi.org/10.6084/m9.figshare.21185573.v1 and 5 more links, https://doi.org/10.6084/m9.figshare.21185576.v1, https://doi.org/10.6084/m9.figshare.21185579.v1, https://doi.org/10.6084/m9.figshare.21185588.v1, https://doi.org/10.6084/m9.figshare.21185591.v1, https://doi.org/10.6084/m9.figshare.21185594.v1 (show fewer)

  Dataset

• Sampling the fish gill microbiome: a comparison of tissue biopsies and swabs (dataset)

  Clinton, M. (Creator), Wyness, A. J. (Creator), Martin, S. A. M. (Creator), Brierley, A. S. (Creator) & Ferrier, D. E. K. (Creator), NCBI GenBank, 2021

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667072

  Dataset

• Within-generation and transgenerational social plasticity interact during rapid adaptive evolution

  Sturiale, S. (Creator) & Bailey, N. (Creator), Dryad, 2022

  DOI: 10.5061/dryad.0rxwdbs4c

  Dataset

• Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations (dataset)

  Cox-Singh, J. (Creator), European Nucleotide Archive (ENA), 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB52783

  Dataset

• Intrasexual aggression reduces mating success in field crickets (code)

  Tinsley, E. K. (Creator) & Bailey, N. W. (Creator), GitHub, 2023

  https://github.com/ektinsley/Tinsley-Bailey

  Dataset: Software

• The missing fraction problem as an episodes of selection problem (dataset & code)

  Mittell, L. (Creator) & Morrissey, M. B. (Creator), GitHub, 2024

  https://github.com/eamittell/missing_fraction

  Dataset

• Divergence and introgression among the virilis group of Drosophila.

  Yusuf, L. H. (Creator), Tyukmaeva, V. (Creator), Hoikkala, A. (Creator) & Ritchie, M. G. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.7097273

  Dataset

• KLFDAPC: a supervised machine learning approach for spatial genetic structure analysis (dataset)

  Gaggiotti, O. E. (Creator), European Nucleotide Archive (ENA), 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJNA289433?show=analyses

  Dataset