School of Mathematics and Statistics

Search results

• Genomic Evolution of Breast Cancer Metastasis and Relapse (dataset)

  Lynch, A. (Creator), European Genome-phenome Archive (EGA), 2017

  https://www.ebi.ac.uk/ega/datasets/EGAD00001002698 and 2 more links, https://www.ebi.ac.uk/ega/datasets/EGAD00001002697, https://www.ebi.ac.uk/ega/datasets/EGAD00001002696 (show fewer)

  Dataset

• Mutation calls for 'A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy'

  Noorani, A. (Creator), Bornschein, J. (Creator), Lynch, A. (Creator), Secrier, M. (Creator), Achilleos, A. (Creator), Eldridge, M. (Creator), Bower, L. (Creator), Weaver, J. M. J. (Creator), Crawte, J. (Creator), Ong, C.-A. (Creator), Shannon, N. (Creator), MacRae, S. (Creator), Grehan, N. (Creator), Nutzinger, B. (Creator), O'Donovan, M. (Creator), Hardwick, R. (Creator), Tavaré, S. (Creator) & Fitzgerald, R. C. (Creator), International Cancer Genome Consortium (ICGC), 2017

  https://dcc.icgc.org/projects/ESAD-UK

  Dataset

• A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing (dataset)

  Alioto, T. S. (Creator), Buchhalter, I. (Creator), Derdak, S. (Creator), Hutter, B. (Creator), Eldridge, M. D. (Creator), Hovig, E. (Creator), Heisler, L. E. (Creator), Beck, T. A. (Creator), Simpson, J. T. (Creator), Tonon, L. (Creator), Sertier, A.-S. (Creator), Patch, A.-M. (Creator), Jaeger, N. (Creator), Ginsbach, P. (Creator), Drews, R. (Creator), Paramasivam, N. (Creator), Kabbe, R. (Creator), Chotewutmontri, S. (Creator), Diessl, N. (Creator), Previti, C. (Creator), Schmidt, S. (Creator), Brors, B. (Creator), Feuerbach, L. (Creator), Heinold, M. (Creator), Groebner, S. (Creator), Korshunov, A. (Creator), Tarpey, P. S. (Creator), Butler, A. P. (Creator), Hinton, J. (Creator), Jones, D. (Creator), Menzies, A. (Creator), Raine, K. (Creator), Shepherd, R. (Creator), Stebbings, L. (Creator), Teague, J. W. (Creator), Ribeca, P. (Creator), Castro Giner, F. (Creator), Beltran, S. (Creator), Raineri, E. (Creator), Dabad, M. (Creator), Heath, S. C. (Creator), Gut, M. (Creator), Denroche, R. E. (Creator), Harding, N. J. (Creator), Yamaguchi, T. N. (Creator), Fujimoto, A. (Creator), Nakagawa, H. (Creator), Quesada, C. (Creator), Valdes-Mas, R. (Creator), Nakken, S. (Creator), Vodak, D. (Creator), Bower, L. (Creator), Lynch, A. (Creator), Anderson, C. L. (Creator), Waddell, N. (Creator), Pearson, J. V. (Creator), Grimmond, S. M. (Creator), Peto, M. (Creator), Spellman, P. (Creator), He, M. (Creator), Kandoth, C. (Creator), Lee, S. (Creator), Zhang, J. (Creator), Letourneau, L. (Creator), Ma, S. (Creator), Seth, S. (Creator), Torrents, D. (Creator), Xi, L. (Creator), Wheeler, D. A. (Creator), Lopez-Otin, C. (Creator), Campo, E. (Creator), Campbell, P. J. (Creator), Boutros, P. C. (Creator), Puente, X. S. (Creator), Gerhard, D. S. (Creator), Pfister, S. M. (Creator), McPherson, J. D. (Creator), Hudson, T. J. (Creator), Schlesner, M. (Creator), Lichter, P. (Creator), Eils, R. (Creator), Jones, D. T. W. (Creator) & Gut, I. G. (Creator), European Genome-phenome Archive (EGA), 2015

  https://www.ebi.ac.uk/ega/studies/EGAS00001001539

  Dataset

• 5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer (dataset)

  Lynch, A. (Creator), Gene Expression Omnibus (GEO), 3 Feb 2015

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?token=jpwzvsowiyuamzs&acc=GSE47592

  Dataset

• Appraising the relevance of DNA copy number loss and gain in prostate cancer using whole genome DNA sequence data (dataset)

  Lynch, A. (Creator), Camacho, N. (Creator), Van Loo, P. (Creator), Edwards, S. (Creator), Kay (Jonathan D Kay), J. D. (Creator), Matthews, L. (Creator), Haase, K. (Creator), Clark, J. (Creator), Dennis, N. (Creator), Thomas, S. (Creator), Kremeyer, B. (Creator), Zamora, J. (Creator), Butler, A. P. (Creator), Gundem, G. (Creator), Merson, S. (Creator), Luxton, H. (Creator), Hawkins, S. (Creator), Ghori, M. (Creator), Marsden, L. (Creator), Lambert, A. (Creator), Karaszi, K. (Creator), Pelvender, G. (Creator), Massie, C. E. (Creator), Kote-Jarai (Zsofia Kote-Jarai), Z. (Creator), Raine (Keiran Raine), K. (Creator), Jones, D. (Creator), Howat, W. J. (Creator), Hazell, S. (Creator), Livni, N. (Creator), Fisher, C. (Creator), Ogden, C. (Creator), Kumar, P. (Creator), Thompson, A. (Creator), Nicol, D. (Creator), Mayer, E. (Creator), Dudderidge, T. (Creator), Yu, Y. (Creator), Zhang, H. (Creator), Shah, N. C. (Creator), Gnanapragasam, V. J. (Creator), The CRUK-ICGC Prostate Group (Creator), Isaacs, W. (Creator), Visakorpi, T. (Creator), Hamdy, F. (Creator), Berney, D. (Creator), Verrill, C. (Creator), Warren, A. Y. (Creator), Wedge, D. C. (Creator), Foster, C. S. (Creator), Lu (Yong-Jie Lu), Y. J. (Creator), Bova, G. S. (Creator), Whitaker, H. C. (Creator), McDermott, U. (Creator), Neal, D. E. (Creator), Eeles, R. (Creator), Cooper, C. S. (Creator) & Brewer, D. S. (Creator), European Genome-phenome Archive (EGA), 2017

  https://www.ebi.ac.uk/ega/studies/EGAS00001000262

  Dataset

• Incorporating Computational Challenges into a Multidisciplinary Course on Stochastic Processes (code)

  Stewart, A. J. (Creator), GitHub, 2021

  https://github.com/josic/stochastic_process_bio

  Dataset: Software

• daviddritschel/2D_stratifiedflow_pseudospectral: PS version 0.0.4

  Frey, M. (Contributor) & daviddritschel (Contributor), Zenodo, 2022

  DOI: 10.5281/zenodo.5940146

  Dataset: Software

• Data from: Wintering bird communities are tracking climate change faster than breeding communities

  Lehikoinen, A. (Contributor), Lindström, Å. (Contributor), Santangeli, A. (Contributor), Sirkiä, P. (Contributor), Brotons, L. (Contributor), Devictor, V. (Contributor), Elts, J. (Contributor), Fobben, R. P. B. (Contributor), Heldbjerg, H. (Contributor), Herrando, S. (Contributor), Herremans, M. (Contributor), Hudson, M.-A. R. (Contributor), Jiguet, F. (Contributor), Johnston, A. (Contributor), Lorrilliere, R. (Contributor), Marjakangas, E.-L. (Contributor), Michel, N. L. (Contributor), Moshøj, C. M. (Contributor), Nellis, R. (Contributor), Paquet, J.-Y. (Contributor), Smith, A. C. (Contributor), Szep, T. (Contributor) & Van Turnhout, C. (Contributor), Dryad, 5 Jan 2021

  DOI: 10.5061/dryad.qnk98sffh

  Dataset

• Cholinekinase alpha as an androgen receptor chaperone and prostate cancer therapeutic target (dataset)

  Lynch, A. (Creator), Gene Expression Omnibus (GEO), 2015

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi

  Dataset

• matt-frey/ps3d: ps3d (all versions)

  Frey, M. (Creator) & Dritschel, D. G. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.6979867

  Dataset: Software

• A code for computing the surface deflection angle in an Ekman spiral for vertically-varying eddy viscosity

  Dritschel, D. (Creator), Zenodo, 2020

  DOI: 10.5281/zenodo.3904295

  Dataset: Software

• Delphinids – Dolphins in the Gulf of Mexico, 2010-2017

  Frasier, K. E. (Creator), Wiggins, S. M. (Creator), Harris, D. V. (Creator), Marques, T. A. L. O. (Creator), Thomas, L. J. (Creator) & Hildebrand, J. A. (Creator), GRIIDC, 2016

  DOI: 10.7266/N7S75D8D, https://data.gulfresearchinitiative.org/data/R4.x267.180:0010

  Dataset

• All simulation results, figures and code regarding the manuscript: Calibrating models of cancer invasion: parameter estimation using Approximate Bayesian Computation and gradient matching

  Xiao, Y. (Contributor), Thomas, L. (Contributor) & Chaplain, M. (Contributor), Dryad, 26 Mar 2020

  DOI: 10.5061/dryad.mkkwh70z2

  Dataset

• Reproducing the analyses of: "Flexible hidden Markov models for behaviour-dependent habitat selection"

  Klappstein, N. (Creator), Thomas, L. (Creator) & Michelot, T. (Creator), Zenodo, 2023

  DOI: 10.5281/zenodo.7872602

  Dataset: Software

• Updated northern Gulf of Mexico cetacean population recovery trajectories following the Deepwater Horizon oil spill (Github dataset)

  Marques, T. A. (Creator), Thomas, L. (Creator) & Booth, C. G. (Creator), GitHub, 2023

  https://github.com/TiagoAMarques/CARMMHApapersSI

  Dataset

• Population consequences of the Deepwater Horizon oil spill on pelagic cetaceans (GRIIDC dataset)

  Marques, T. A. (Creator), Thomas, L. (Creator) & Booth, C. G. (Creator), Gulf of Mexico Research Initiative Information and Data Cooperative, 2022

  DOI: 10.7266/n7-rmv4-qx46

  Dataset

• Model predicts catastrophic decline of common bottlenose dolphin (Tursiops truncatus) population under proposed land restoration project in Barataria Bay, Louisiana, USA (dataset)

  Thomas, L. (Creator) & Marques, T. A. (Creator), GitHub, 2022

  https://github.com/TiagoAMarques/CARMMHApapersSI

  Dataset

• Discrete-space continuous-time models of marine mammal exposure to Navy sonar

  Jones-Todd, C. (Contributor), Pirotta, E. (Contributor), Durban, J. (Contributor), Claridge, D. (Contributor), Baird, R. (Contributor), Falcone, E. (Contributor), Schorr, G. (Contributor), Watwood, S. (Contributor) & Thomas, L. (Contributor), Dryad, 14 Jun 2021

  DOI: 10.5061/dryad.dr7sqv9zb

  Dataset

• Accommodating false positives within acoustic spatial capture–recapture, with variable source levels, noisy bearings and an inhomogeneous spatial density (code)

  Petersma, F. T. (Creator), Thomas, L. (Creator), Harris, D. (Creator) & Marques, T. A. (Creator), GitHub, 2023

  https://github.com/fpetersma/bowhead_whale_ASCR

  Dataset: Software

• PPR Study

  Popov, V. (Contributor), Harvard Dataverse, 14 Sept 2021

  DOI: 10.7910/dvn/sn7ljc

  Dataset

• Distance sampling detection functions: 2D or not 2D? (dataset)

  Borchers, D. L. (Creator) & Cox, M. J. (Creator), GitHub, 15 Jun 2017

  https://github.com/david-borchers/LT2D

  Dataset

• A unifying model for capture-recapture and distance sampling surveys of wildlife populations (dataset)

  Borchers, D. L. (Creator), Stevenson, B. (Creator), Kidney, D. (Creator), Thomas, L. J. (Creator) & Marques, T. A. L. O. (Creator), GitHub, 9 Jun 2017

  https://github.com/b-steve/admbsecr/

  Dataset

• Songbird line transect distance sampling data, Montrave Estate, Scotland

  Rexstad, E. (Creator) & Buckland, S. (Creator), Dryad, 2022

  DOI: 10.5061/dryad.k98sf7m95

  Dataset

• Spatial variation in population-density, movement and detectability of snow leopards in a multiple use landscape in Spiti Valley, Trans-Himalaya

  Sharma, R. K. (Contributor), Sharma, K. (Contributor), Borchers, D. (Contributor), Bhatnagar, Y. V. (Contributor), Suryawanshi, K. S. (Contributor) & Mishra, C. (Contributor), Dryad, 2 Jun 2021

  DOI: 10.5061/dryad.3r2280gfx

  Dataset

• Modelling the impact of condition-dependent responses and lipid store availability on the consequences of disturbance in a cetacean; model and analysis code

  Burslem, A. C. (Creator), Isojunno, S. (Creator), Pirotta, E. (Creator) & Miller, P. J. (Creator), OSF, 2022

  DOI: 10.17605/OSF.IO/NJ83K

  Dataset: Software