Infection and Global Health Division

Search results

• Data underpinning: Real-time monitoring of live mycobacteria with a microfluidic acoustic-Raman platform

  Baron, V. O. (Creator), Chen, M. (Creator), Hammarstrom, B. (Creator), Hammond, R. J. H. (Creator), Glynne-Jones, P. (Creator), Gillespie, S. H. (Creator) & Dholakia, K. (Creator), University of St Andrews, 25 Mar 2020

  DOI: 10.17630/8fd4d829-b63b-4e72-a14e-921eee1638a7

  Dataset

  File

• Rapid Detection of Bacteraemia and Antimicrobial Susceptibility using a Scattered Light Integrated Collection (SLIC) Device (thesis data)

  Falconer, K. (Creator), Gillespie, S. H. (Supervisor) & Sloan, D. J. (Supervisor), University of St Andrews, 4 Jun 2025

  DOI: 10.17630/b3a86278-d70d-46b8-9a51-1fbe28eb923e

  Dataset: Thesis dataset

• De novo genome assembly of Plasmodium knowlesi from contemporary clinical isolates - a novel scalable resource to take forward malaria research (thesis data)

  Oresegun, D. R. (Creator), Cox-Singh, J. (Supervisor) & Reynolds, P. A. (Supervisor), University of St Andrews, 2 Nov 2023

  DOI: 10.17630/541e495e-231a-4c43-bd02-904bc3fd6f79

  Dataset: Thesis dataset

  File

• Anal lesions (AIN + cancers) collected in Scotland from 2009 to 2018 (thesis data)

  Guerendiain Regalado, D. (Creator) & Holden, M. (Supervisor), University of St Andrews, 1 Nov 2023

  DOI: 10.17630/1863d9da-1fe8-468c-a5fe-fcbe74bdaf32, https://doi.org/10.17630/sta/627

  Dataset: Thesis dataset

  File

• UTImodel Datasets

  Doukkali, A. L. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.7293870

  Dataset

• access-eye-facility-mapping

  Kitema, G. F. (Creator) & Zhao, J. (Creator), GitHub, 2023

  https://github.com/Jinfeng-Zhao/access-eye-facility-mapping

  Dataset: Software

• Characterization of DNA methylation in Malawian Mycobacterium tuberculosis clinical isolates (dataset)

  Sloan, D. J. (Creator), European Nucleotide Archive (ENA), 2021

  https://www.ebi.ac.uk/ena/browser/view/PRJEB28592

  Dataset

• Localization and phenotyping of tuberculosis bacteria using a combination of deep learning and SVMs (dataset)

  Zachariou, M. (Creator), Arandelovic, O. (Creator), Dombay, E. (Creator), Sabiiti, W. (Creator), Mtafya, B. A. (Creator), Ntinginya, N. (Creator) & Sloan, D. J. (Creator), University of St Andrews, 29 Feb 2024

  DOI: 10.17630/a4ccdb1a-53ea-4fb9-9fd2-807bfd2da05d

  Dataset

  File

• Dataset for the manuscript: Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages.

  Rowlatt, C. F. (Creator), Chaplain, M. A. J. (Creator), Hughes, D. J. (Creator), Gillespie, S. H. (Creator), Dockrell, D. H. (Creator), Johannessen, I. (Creator) & Bowness, R. (Creator), Zenodo, 2022

  DOI: 10.5281/zenodo.6514656

  Dataset

• Modelling the effects of environmental heterogeneity within the lung on the tuberculosis life-cycle (dataset)

  Bowness, R. (Creator), Dobson, S. A. (Creator) & Gillespie, S. H. (Creator), Mendeley Data, 2020

  DOI: 10.17632/y64c95bghv.1

  Dataset: Software

• The role of respiratory microbiome in early bactericidal activity of anti-tuberculosis therapy and treatment outcome

  Gillespie, S. H. (Creator), NCBI GenBank, 2023

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA729425/

  Dataset

• Staphylococcus aureus: Whole genome sequencing and molecular epidemiology of clinical isolates of Staphylococcus aureus from Algeria (dataset)

  Holden, M. (Creator), NCBI GenBank, 2023

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA930663

  Dataset

• Proposal of serovars 17 and 18 of Actinobacillus pleuropneumoniae based on serological and genotypic analysis (dataset)

  Bossé, J. T. (Creator), Li, Y. (Creator), Sárközi, R. (Creator), Fodor, L. (Creator), Lacouture, S. (Creator), Gottschalk, M. (Creator), Casas Amoribieta, M. (Creator), Angen, Ø. (Creator), Nedbalcova, K. (Creator), Holden, M. T. G. (Creator), Maskell, D. J. (Creator), Tucker, A. W. (Creator), Wren, B. W. (Creator), Rycroft, A. N. (Creator) & Langford, P. R. (Creator), National Center for Biotechnology Information, 9 Apr 2018

  https://www.ncbi.nlm.nih.gov/nucleotide/

  Dataset

• Association of fluvoxamine with mortality and symptom resolution among inpatients with COVID-19 in Uganda: a prospective interventional open-label cohort study (dataset)

  Muttamba, W. (Creator), GitHub, 2023

  https://github.com/mlsrico/fluvoxamine_uganda

  Dataset: Software

• Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations (dataset)

  Cox-Singh, J. (Creator), European Nucleotide Archive (ENA), 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB52783

  Dataset

• Towards Fully Automated Analysis of Sputum Smear Microscopy Images (thesis data)

  Zachariou, M. (Creator), Arandelovic, O. (Supervisor), Sloan, D. J. (Supervisor), Mtafya, B. A. (Data Collector) & Sabiiti, W. (Data Manager), University of St Andrews, 19 Apr 2024

  DOI: 10.17630/28cc5ee6-7cfa-4335-b591-e1e9247dc4f6, https://doi.org/10.17630/sta/858

  Dataset: Thesis dataset

  File

• Distinct evolutionary patterns of Neisseria meningitidis serogroup B disease outbreaks at two universities in the USA (dataset)

  Hao, L. (Creator), Holden, M. T. G. (Creator), Wang, X. (Creator), Andrew, L. (Creator), Wellnitz, S. (Creator), Hu, F. (Creator), Whaley, M. (Creator), Sammons, S. (Creator), Knipe, K. (Creator), Frace, M. (Creator), McNamara, L. A. (Creator), Liberator, P. (Creator) & Anderson, A. S. (Creator), National Center for Biotechnology Information, 21 Jul 2017

  https://www.ncbi.nlm.nih.gov/bioproject/395340

  Dataset

• Gene exchange drives the ecological success of a multi-host bacterial pathogen (dataset)

  Richardson, E. J. (Creator), Bacigalupe, R. (Creator), Harrison, E. M. (Creator), Weinert, L. A. (Creator), Lycett, S. (Creator), Vrieling, M. (Creator), Robb, K. (Creator), Hoskisson, P. A. (Creator), Holden, M. T. G. (Data Collector), Feil, E. J. (Creator), Paterson, G. K. (Creator), Tong, S. Y. C. (Creator), Shittu, A. (Creator), van Wamel, W. (Creator), Aanensen, D. M. (Creator), Parkhill, J. (Creator), Peacock, S. J. (Creator), Corander, J. (Creator), Holmes, M. (Creator) & Fitzgerald, J. R. (Creator), EMBL-EBI, 4 Aug 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB22062

  Dataset

• "Antibiotics under our feet" Full Bioinformatics Output (Batch 2)

  Cornwell, R. M. (Creator), Oresegun, D. R. (Creator), Melo Czekster, C. (Creator) & Thorpe, P. J. (Contributor), University of St Andrews, 16 Jan 2023

  DOI: 10.17630/736bc89c-6e32-4a87-8b2e-8575172259f8

  Dataset

  File

• Genomic investigations of unexplained acute hepatitis in children (code)

  Holden, M. (Creator), GitHub, 2023

  https://github.com/sarah-buddle/unknown-hepatitis and one more link, https://github.com/MahdiMoradiMarjaneh/proteomics_and_transcriptomics_of_hepatitis (show fewer)

  Dataset: Software

• Comparative sequence analysis of the capsular polysaccharide loci of Actinobacillus pleuropneumoniae serovars 1-18, and development of two multiplex PCRs for comprehensive capsule typing (dataset)

  Bossé, J. T. (Creator), Li, Y. (Creator), Fernandez Crespo, R. (Creator), Lacouture, S. (Creator), Gottschalk, M. (Creator), Sárközi, R. (Creator), Fodor, L. (Creator), Casas Amoribieta, M. (Creator), Angen, Ø. (Creator), Nedbalcova, K. (Creator), Holden, M. T. G. (Creator), Maskell, D. J. (Creator), Tucker, A. W. (Creator), Wren, B. W. (Creator), Rycroft, A. N. (Creator) & Langford, P. R. (Creator), National Center for Biotechnology Information, 2018

  https://www.ncbi.nlm.nih.gov/nuccore/MG868948 and 4 more links, https://www.ncbi.nlm.nih.gov/nuccore/MG868949, https://www.ncbi.nlm.nih.gov/nuccore/MG868950, https://www.ncbi.nlm.nih.gov/nuccore/MG868951, https://www.ncbi.nlm.nih.gov/nuccore/MG868952 (show fewer)

  Dataset

• Mapping HPV 16 sub-lineages in anal cancer and implications for disease outcomes (dataset)

  Guerendiain Regalado, D. (Creator) & Holden, M. (Creator), NCBI GenBank, 2022

  https://www.ncbi.nlm.nih.gov/popset?LinkName=nuccore_popset&from_uid=2337086548 and one more link, https://www.ncbi.nlm.nih.gov/popset/?term=OP728339 (show fewer)

  Dataset

• Unravelling the complex interplay between antibiotic consumption and adaptive changes in methicillin-resistant Staphylococcus aureus (dataset)

  Holden, M. (Creator), European Nucleotide Archive (ENA), 2024

  https://www.ebi.ac.uk/ena/browser/view/PRJEB2561

  Dataset

• The evolution of antimicrobial peptide resistance in Pseudomonas aeruginosa is severely constrained by random peptide mixtures

  Antunes, B. (Creator), Zanchi, C. (Creator), Johnston, P. R. (Creator), Maron, B. (Creator), Witzany, C. (Creator), Regoes, R. (Creator), Hayouka, Z. (Creator) & Rolff, J. (Creator), Zenodo, 22 May 2024

  DOI: 10.5281/zenodo.11209304

  Dataset

• Gryllus bimaculatus (two-spotted cricket)

  Johnston, P. (Creator), NCBI GenBank, 2019

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA547710/

  Dataset