Description
frozen version of the code used in the following publication:
The genome and lifestage-specific transcriptomes of a plant-parasitic nematode and its host reveal susceptibility genes involved in trans-kingdom synthesis of vitamin B5
Shahid Siddique1, Zoran S. Radakovic2†, Clarissa Hiltl2†, Clement Pellegrin3†, Thomas J. Baum4, Helen Beasley3, Oliver Chitambo2 , Divykriti Chopra2, Etienne G.J. Danchin5, Eric Grenier6, Samer S. Habash2, Shamim Hasan2, Hans Helder7, Tarek Hewezi8, Julia Holbein2, Martijn Holterman7, Sławomir Janakowski9, Georgios D. Koutsovoulos5, Olaf P. Kranse2, Jose L. Lozano-Torres7, Tom R. Maier3, Rick E. Masonbrink10, Badou Mendy2, Esther Rimer2, Mirosław Sobczak9, Unnati Sonawala2, Mark G. Sterken7, Peter Thorpe11, Joris J.M. van Steenbrugge7, Nageena Zahid12, Florian Grundler<em>2, and Sebastian Eves-van den Akker</em>3
1 Department of Entomology and Nematology, University of California Davis, One Shields Avenue, Davis, CA 95616, USA
2 Rheinische Friedrich-Wilhelms-University of Bonn, INRES - Molecular Phytomedicine, Karlrobert- Kreiten-Straße 13, D-53115 Bonn, Germany
3 The Crop Science Centre, Department of Plant Sciences, University of Cambridge, UK, CB2 3EA
4 Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA
5 Université Côte d'Azur, INRAE, CNRS, Institut Sophia Agrobiotech, Sophia-Antipolis, France
6 IGEPP, INRAE, Institut Agro, Univ Rennes, 35650, Le Rheu, France
7 Laboratory of Nematology, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands
8 Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
9 Department of Botany, Institute of Biology, Warsaw University of Life Sciences (SGGW), Nowoursynowska 159, 02-787 Warsaw, Poland
10 Genome Informatics Facility, Iowa State University, Ames, IA 50010, USA
11 Mackenzie Institute for early diagnosis, School of Medicine, University of St Andrews, North Haugh, St Andrews KY16 9TF, UK.
12 Institute for Microbiology and Biotechnology, Rheinische Friedrich-Wilhelms-University of Bonn, Meckenheimer Allee 168, 53115 Bonn Germany.
†equal contributions
*corresponding authors. [email protected] and [email protected]
Samer S. Habash current address; BASF Vegetable Seeds, Napoleonsweg 152, 6083 AB Nunhem, the Netherlands
Zoran S. Radakovic current address: P.H. Petersen Saatzucht Lundsgaard GmbH , 24977 Grundhof, Germany
The genome and lifestage-specific transcriptomes of a plant-parasitic nematode and its host reveal susceptibility genes involved in trans-kingdom synthesis of vitamin B5
Shahid Siddique1, Zoran S. Radakovic2†, Clarissa Hiltl2†, Clement Pellegrin3†, Thomas J. Baum4, Helen Beasley3, Oliver Chitambo2 , Divykriti Chopra2, Etienne G.J. Danchin5, Eric Grenier6, Samer S. Habash2, Shamim Hasan2, Hans Helder7, Tarek Hewezi8, Julia Holbein2, Martijn Holterman7, Sławomir Janakowski9, Georgios D. Koutsovoulos5, Olaf P. Kranse2, Jose L. Lozano-Torres7, Tom R. Maier3, Rick E. Masonbrink10, Badou Mendy2, Esther Rimer2, Mirosław Sobczak9, Unnati Sonawala2, Mark G. Sterken7, Peter Thorpe11, Joris J.M. van Steenbrugge7, Nageena Zahid12, Florian Grundler<em>2, and Sebastian Eves-van den Akker</em>3
1 Department of Entomology and Nematology, University of California Davis, One Shields Avenue, Davis, CA 95616, USA
2 Rheinische Friedrich-Wilhelms-University of Bonn, INRES - Molecular Phytomedicine, Karlrobert- Kreiten-Straße 13, D-53115 Bonn, Germany
3 The Crop Science Centre, Department of Plant Sciences, University of Cambridge, UK, CB2 3EA
4 Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA
5 Université Côte d'Azur, INRAE, CNRS, Institut Sophia Agrobiotech, Sophia-Antipolis, France
6 IGEPP, INRAE, Institut Agro, Univ Rennes, 35650, Le Rheu, France
7 Laboratory of Nematology, Wageningen University & Research, Droevendaalsesteeg 1, 6708PB, Wageningen, The Netherlands
8 Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
9 Department of Botany, Institute of Biology, Warsaw University of Life Sciences (SGGW), Nowoursynowska 159, 02-787 Warsaw, Poland
10 Genome Informatics Facility, Iowa State University, Ames, IA 50010, USA
11 Mackenzie Institute for early diagnosis, School of Medicine, University of St Andrews, North Haugh, St Andrews KY16 9TF, UK.
12 Institute for Microbiology and Biotechnology, Rheinische Friedrich-Wilhelms-University of Bonn, Meckenheimer Allee 168, 53115 Bonn Germany.
†equal contributions
*corresponding authors. [email protected] and [email protected]
Samer S. Habash current address; BASF Vegetable Seeds, Napoleonsweg 152, 6083 AB Nunhem, the Netherlands
Zoran S. Radakovic current address: P.H. Petersen Saatzucht Lundsgaard GmbH , 24977 Grundhof, Germany
Date made available | 2022 |
---|---|
Publisher | Zenodo |