K-mer databases of plant virus sequences for use with the Kodoja workflow

Amanda Baizan Edge (Creator)
Peter Cock (Creator)
Stuart MacFarlane (Creator)
Wendy McGavin (Creator)
Lesley Torrance (Creator)
Susan Jones (Creator)

Dataset

Date made available	4 Sept 2018
Publisher	Zenodo

Contact

[email protected]

DOI
10.5281/zenodo.1406071

1 Finished

A bioinformatics tool for the accelerate: A bioinformatics tool for the accelerated diagnosis of multiple viral infections in crops using next generation sequencing.
Torrance, L. (PI)
BBSRC
17/10/16 → 16/01/18
Project: Standard

1 Article

Kodoja: a workflow for virus detection in plants using k-mer analysis of RNA-sequencing data
Baizan-Edge, A., Cock, P., MacFarlane, S., McGavin, W., Torrance, L. & Jones, S., 1 Mar 2019, In: Journal of General Virology. 100, p. 533-542
Research output: Contribution to journal › Article › peer-review

Open Access
File
11 Citations (Scopus)

9 Downloads (Pure)

Kodoja: A workflow for virus detection in plants using k-mer analysis of RNA-sequencing data (software)
Baizan Edge, A. (Creator), Cock, P. (Creator), MacFarlane, S. (Creator), McGavin, W. (Creator), Torrance, L. (Creator) & Jones, S. (Creator), GitHub, 2018
https://github.com/abaizan/kodoja
Dataset: Software

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