Estimating full-field displacement in biological images using deep learning (dataset)



This dataset supports the publication titled “Estimating full-field displacement in biological images using deep learning” and the associated code available at:

We provide a minimal example dataset for inference and training, demonstrating the typical data layout, configurations files and outputs ( Further, we provide the cardiomyocytes videos as image sequences ( The Drosophila videos may be accessed from the original publication.

We provide a portable snapshop of Fiji ( that includes deepImageJ and our models. We also provide the standalone compiled binaries for inference ( Source code is available at

We provide the individual DEFORM-Net model in pytorch and torchscript format ( and All models are further provided in a combined zipped format for pytorch and torchscript ( and
Date made available24 May 2024
PublisherUniversity of St Andrews

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