Projects per year
Description
Published DOI: https://doi.org/10.3389/fgene.2022.855052
Supporting data for the attached publication. De Novo assembled genomes of <em>Plasmodium knowlesi</em> generated using Nanopore long reads. Supporting statistical results are included. Variant call files from structural variant calls are attached for each genome. Additionally, statistical results from BUSCO, QUAST, Pomoxis and AGAT are included. Annotation files in GFF3 format including further analyses of these annotation files are attached. Scripts for post analysis are attached with scripts for data generation presented on Github repository: "Pknowlesi_denovo_genome_assembly"
Supporting data for the attached publication. De Novo assembled genomes of <em>Plasmodium knowlesi</em> generated using Nanopore long reads. Supporting statistical results are included. Variant call files from structural variant calls are attached for each genome. Additionally, statistical results from BUSCO, QUAST, Pomoxis and AGAT are included. Annotation files in GFF3 format including further analyses of these annotation files are attached. Scripts for post analysis are attached with scripts for data generation presented on Github repository: "Pknowlesi_denovo_genome_assembly"
Date made available | 2021 |
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Publisher | Zenodo |
Projects
- 2 Finished
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ISSF3 Seedcorn - Janet Cox-Singh: ISSF3 Cox-Singh
Cox-Singh, J. (PI)
1/03/17 → 30/09/20
Project: Studentship
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Research output
- 1 Article
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De novo assembly of Plasmodium knowlesi genomes from clinical samples explain the counterintuitive intrachromosomal organization of variant SICAvar and kir multiple gene family members
Oresegun, D. R., Thorpe, P., Benavente, E. D., Campino, S., Fauzi, M., Moon, R. W., Clark, T. G. & Cox-Singh, J., 23 May 2022, In: Frontiers in Genetics. 13, 16 p., 855052.Research output: Contribution to journal › Article › peer-review
Open AccessFile
Datasets
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De novo assembly of Plasmodium knowlesi genomes from clinical samples explain the counterintuitive intrachromosomal organization of variant SICAvar and kir multiple gene family members (code)
Thorpe, P. J. (Creator), GitHub, 2022
https://github.com/damioresegun/Pknowlesi_denovo_genome_assembly and one more link, https://github.com/peterthorpe5/plasmidium_genomes (show fewer)
Dataset: Software