Description
Dataset for the manuscript:
Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages. preprint, bioRxiv, 2022. DOI: 10.1101/2022.05.06.490883
Each zip file contains the raw computational data (as a gzip compressed tarball), YAML input files, as well as Python plotting scripts. The Python plotting scripts have dependencies on the packages: <em>tarfile</em>, <em>multiprocessing</em>, <em>numpy</em>, <em>scipy</em>, and <em>matplotlib</em>. Note that the Python plotting scripts plot directly from the gzip compressed tarballs.
The corresponding code can be found on GitHub: https://github.com/Ruth-Bowness-Group/CAModel
Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages. preprint, bioRxiv, 2022. DOI: 10.1101/2022.05.06.490883
Each zip file contains the raw computational data (as a gzip compressed tarball), YAML input files, as well as Python plotting scripts. The Python plotting scripts have dependencies on the packages: <em>tarfile</em>, <em>multiprocessing</em>, <em>numpy</em>, <em>scipy</em>, and <em>matplotlib</em>. Note that the Python plotting scripts plot directly from the gzip compressed tarballs.
The corresponding code can be found on GitHub: https://github.com/Ruth-Bowness-Group/CAModel
| Date made available | 2022 |
|---|---|
| Publisher | Zenodo |
Projects
- 2 Finished
-
Using individual-based mathematical: Using individual-based mathematical models to study antibiotic resistance
Bowness, R. (PI)
1/03/18 → 30/09/21
Project: Standard
Research output
- 1 Preprint
-
Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model: Part I: Macrophages
Rowlatt, C. F., Chaplain, M. A. J., Hughes, D. J., Gillespie, S. H., Dockrell, D. H., Johannessen, I. & Bowness, R., 6 May 2022, bioRxiv, 35 p.Research output: Working paper › Preprint
Open Access