Code analysis and supplementary files for "Molecular responses to Marteilia sydneyi infection in the Sydney rock oyster Saccostrea glomerata"

his dataset contains the de novo transcriptome assembly, gene and protein prediction and annotation, R scripts and workflows used to analyse differential gene expression in Sydney rock oysters (Saccostrea glomerata) infected with the parasite Marteilia sydneyi. The code includes differential expression analysis using DESeq2, gene ontology (GO) enrichment analysis, and visualization of results. These analyses were conducted as part of a study investigating the molecular mechanisms underlying oyster immune responses to parasitic infections. The provided scripts are essential for reproducing the results presented in the associated research paper "Molecular responses to Marteilia sydneyi infection in the Sydney rock oyster Saccostrea glomerata" and serve as a resource for researchers conducting transcriptomic studies on marine invertebrates.