BioDeepTime: database and compilation code

  • Jansen A. Smith (Creator)
  • Marina C. Rillo (Creator)
  • Ádám T. Kocsis (Creator)
  • Maria Dornelas (Creator)
  • David Fastovich (Creator)
  • Huai-Hsuan M. Huang (Creator)
  • Lukas Jonkers (Creator)
  • Wolfgang Kiessling (Creator)
  • Qijian Li (Creator)
  • Lee Hsiang Liow (Creator)
  • Miranda Margulis-Ohnuma (Creator)
  • Stephen Meyers (Creator)
  • Lin Na (Creator)
  • Amelia M. Penny (Creator)
  • Kate Pippenger (Creator)
  • Johan Renaudie (Creator)
  • Erin E. Saupe (Creator)
  • Manuel Steinbauer (Creator)
  • Mauro Sugawara (Creator)
  • Adam Tomasovych (Creator)
  • John W. Williams (Creator)
  • Moriaki Yasuhara (Creator)
  • Seth Finnegan (Creator)
  • Pincelli Hull (Creator)

Dataset

Description

The archive includes copies, compilation code, documentation and temporary data files for the BioDeepTime database. Deposited files: Relational database in SQLite format: biodeeptime_sqlite.zip. Denormalized database in zipped .csv format: biodeeptime_csv.zip Denormalized database in zipped .parquet (v1.0) format: biodeeptime_parquet.zip. Denormalized database in .rds (R version 4.0) format: biodeeptime.rds. Description of tables and columns: biodeeptime.md. Database schema: schema.pdf. Synonymy of sources: Synonymy of sources.xlsx. Change log and known issues: NEWS.md Compilation files: bdt_compilation.zip References in .csv format: references.csv Bchron ages calculated for Neotoma: neotoma_bchron.rds This repository accompanies the study BioDeepTime: a database of biodiversity time series for modern and fossil assemblages by Smith et al. (pending publication) and will be updated after a successful peer-review.
Date made available2023
PublisherZenodo
  • BioDeepTime: a database of biodiversity time series for modern and fossil assemblages

    Smith, J., Rillo, M. C., Kocsis, Á. T., Dornelas, M., Fastovich, D., Huang, H-H. M., Jonkers, L., Kiessling, W., Li, Q., Liow, L. H., Margulis-Ohnuma, M., Meyers, S., Na, L., Penny, A. M., Pippenger, K., Renaudie, J., Saupe, E. E., Steinbauer, M. J., Sugawara, M., Tomašovỳch, A., & 4 othersWilliams, J. W., Yasuhara, M., Finnegan, S. & Hull, P. M., 1 Oct 2023, In: Global Ecology and Biogeography. 32, 10, p. 1680-1689 10 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    3 Citations (Scopus)
    10 Downloads (Pure)

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